FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1891, 420 aa
  1>>>pF1KE1891 420 - 420 aa - 420 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5437+/-0.000787; mu= 11.3397+/- 0.047
 mean_var=80.5759+/-16.163, 0's: 0 Z-trim(108.4): 16  B-trim: 0 in 0/52
 Lambda= 0.142880
 statistics sampled from 10149 (10156) to 10149 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.312), width:  16
 Scan time:  3.150

The best scores are:                                      opt bits E(32554)
CCDS10997.1 MRM3 gene_id:55178|Hs108|chr17         ( 420) 2814 589.5  2e-168


>>CCDS10997.1 MRM3 gene_id:55178|Hs108|chr17              (420 aa)
 initn: 2814 init1: 2814 opt: 2814  Z-score: 3137.3  bits: 589.5 E(32554): 2e-168
Smith-Waterman score: 2814; 100.0% identity (100.0% similar) in 420 aa overlap (1-420:1-420)

               10        20        30        40        50        60
pF1KE1 MAALVRPARFVVRPLLQVVQAWDLDARRWVRALRRSPVKVVFPSGEVVEQKRAPGKQPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAALVRPARFVVRPLLQVVQAWDLDARRWVRALRRSPVKVVFPSGEVVEQKRAPGKQPRK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 APSEASAQEQREKQPLEESASRAPSTWEESGLRYDKAYPGDRRLSSVMTIVKSRPFREKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 APSEASAQEQREKQPLEESASRAPSTWEESGLRYDKAYPGDRRLSSVMTIVKSRPFREKQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GKILLEGRRLISDALKAGAVPKMFFFSRLEYLKELPVDKLKGVSLIKVKFEDIKDWSDLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GKILLEGRRLISDALKAGAVPKMFFFSRLEYLKELPVDKLKGVSLIKVKFEDIKDWSDLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 TPQGIMGIFAKPDHVKMTYPKTQLQHSLPLLLICDNLRDPGNLGTILRSAAGAGCSKVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TPQGIMGIFAKPDHVKMTYPKTQLQHSLPLLLICDNLRDPGNLGTILRSAAGAGCSKVLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 TKGCVDAWEPKVLRAGMGAHFRMPIINNLEWETVPNYLPPDTRVYVADNCGLYAQAEMSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TKGCVDAWEPKVLRAGMGAHFRMPIINNLEWETVPNYLPPDTRVYVADNCGLYAQAEMSN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 KASDHGWVCDQRVMKFHKYEEEEDVETGASQDWLPHVEVQSYDSDWTEAPAAVVIGGETY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KASDHGWVCDQRVMKFHKYEEEEDVETGASQDWLPHVEVQSYDSDWTEAPAAVVIGGETY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 GVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQLRGRAEDLSRDRSYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQLRGRAEDLSRDRSYH
              370       380       390       400       410       420




420 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:01:25 2016 done: Sun Nov  6 14:01:25 2016
 Total Scan time:  3.150 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]