FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1884, 410 aa
  1>>>pF1KE1884 410 - 410 aa - 410 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2163+/-0.000897; mu= 10.1895+/- 0.055
 mean_var=140.8290+/-28.019, 0's: 0 Z-trim(111.4): 5  B-trim: 167 in 2/54
 Lambda= 0.108076
 statistics sampled from 12327 (12328) to 12327 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.379), width:  16
 Scan time:  3.130

The best scores are:                                      opt bits E(32554)
CCDS9095.1 TDG gene_id:6996|Hs108|chr12            ( 410) 2774 443.8 1.4e-124


>>CCDS9095.1 TDG gene_id:6996|Hs108|chr12                 (410 aa)
 initn: 2774 init1: 2774 opt: 2774  Z-score: 2349.9  bits: 443.8 E(32554): 1.4e-124
Smith-Waterman score: 2774; 100.0% identity (100.0% similar) in 410 aa overlap (1-410:1-410)

               10        20        30        40        50        60
pF1KE1 MEAENAGSYSLQQAQAFYTFPFQQLMAEAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MEAENAGSYSLQQAQAFYTFPFQQLMAEAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RKRKPRTTEPKQPVEPKKPVESKKSGKSAKSKEKQEKITDTFKVKRKVDRFNGVSEAELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 RKRKPRTTEPKQPVEPKKPVESKKSGKSAKSKEKQEKITDTFKVKRKVDRFNGVSEAELL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 TKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLNHMDDHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 TKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLNHMDDHT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LPGKYGIGFTNMVERTTPGSKDLSSKEFREGGRILVQKLQKYQPRIAVFNGKCIYEIFSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 LPGKYGIGFTNMVERTTPGSKDLSSKEFREGGRILVQKLQKYQPRIAVFNGKCIYEIFSK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 EVFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSARCAQFPRAQDKVHYYIKLKDLRDQLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 EVFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSARCAQFPRAQDKVHYYIKLKDLRDQLK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 GIERNMDVQEVQYTFDLQLAQEDAKKMAVKEEKYDPGYEAAYGGAYGENPCSSEPCGFSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 GIERNMDVQEVQYTFDLQLAQEDAKKMAVKEEKYDPGYEAAYGGAYGENPCSSEPCGFSS
              310       320       330       340       350       360

              370       380       390       400       410
pF1KE1 NGLIESVELRGESAFSGIPNGQWMTQSFTDQIPSFSNHCGTQEQEEESHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 NGLIESVELRGESAFSGIPNGQWMTQSFTDQIPSFSNHCGTQEQEEESHA
              370       380       390       400       410




410 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:43:12 2016 done: Sun Nov  6 14:43:13 2016
 Total Scan time:  3.130 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]