Result of FASTA (omim) for
pFN21AE1876
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1876, 398 aa
1>>>pF1KE1876 398 - 398 aa - 398 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2729+/-0.000396; mu= 17.7158+/- 0.025
mean_var=73.5446+/-14.937, 0's: 0 Z-trim(112.3): 19 B-trim: 657 in 1/52
Lambda= 0.149554
statistics sampled from 21095 (21114) to 21095 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.248), width: 16
Scan time: 7.500
The best scores are: opt bits E(85289)
NP_001186778 (OMIM: 602074) 28S ribosomal protein ( 398) 2691 590.1 3.1e-168
NP_387506 (OMIM: 602074) 28S ribosomal protein S29 ( 398) 2691 590.1 3.1e-168
NP_004623 (OMIM: 602074) 28S ribosomal protein S29 ( 398) 2691 590.1 3.1e-168
XP_016857782 (OMIM: 602074) PREDICTED: 28S ribosom ( 357) 2328 511.7 1.1e-144
NP_001186780 (OMIM: 602074) 28S ribosomal protein ( 357) 2328 511.7 1.1e-144
XP_016857781 (OMIM: 602074) PREDICTED: 28S ribosom ( 357) 2328 511.7 1.1e-144
XP_005245538 (OMIM: 602074) PREDICTED: 28S ribosom ( 357) 2328 511.7 1.1e-144
NP_001186779 (OMIM: 602074) 28S ribosomal protein ( 364) 2081 458.5 1.2e-128
XP_005245537 (OMIM: 602074) PREDICTED: 28S ribosom ( 364) 2081 458.5 1.2e-128
XP_016857780 (OMIM: 602074) PREDICTED: 28S ribosom ( 364) 2081 458.5 1.2e-128
XP_016857786 (OMIM: 602074) PREDICTED: 28S ribosom ( 323) 2075 457.1 2.7e-128
XP_005245539 (OMIM: 602074) PREDICTED: 28S ribosom ( 323) 2075 457.1 2.7e-128
XP_011508274 (OMIM: 602074) PREDICTED: 28S ribosom ( 371) 1386 308.5 1.7e-83
XP_016857779 (OMIM: 602074) PREDICTED: 28S ribosom ( 371) 1386 308.5 1.7e-83
XP_016857778 (OMIM: 602074) PREDICTED: 28S ribosom ( 371) 1386 308.5 1.7e-83
XP_016857785 (OMIM: 602074) PREDICTED: 28S ribosom ( 330) 1153 258.2 2.1e-68
XP_016857784 (OMIM: 602074) PREDICTED: 28S ribosom ( 330) 1153 258.2 2.1e-68
XP_016857783 (OMIM: 602074) PREDICTED: 28S ribosom ( 337) 1153 258.2 2.1e-68
>>NP_001186778 (OMIM: 602074) 28S ribosomal protein S29, (398 aa)
initn: 2691 init1: 2691 opt: 2691 Z-score: 3141.3 bits: 590.1 E(85289): 3.1e-168
Smith-Waterman score: 2691; 100.0% identity (100.0% similar) in 398 aa overlap (1-398:1-398)
10 20 30 40 50 60
pF1KE1 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY
310 320 330 340 350 360
370 380 390
pF1KE1 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL
::::::::::::::::::::::::::::::::::::::
NP_001 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL
370 380 390
>>NP_387506 (OMIM: 602074) 28S ribosomal protein S29, mi (398 aa)
initn: 2691 init1: 2691 opt: 2691 Z-score: 3141.3 bits: 590.1 E(85289): 3.1e-168
Smith-Waterman score: 2691; 100.0% identity (100.0% similar) in 398 aa overlap (1-398:1-398)
10 20 30 40 50 60
pF1KE1 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_387 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_387 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_387 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_387 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_387 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_387 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY
310 320 330 340 350 360
370 380 390
pF1KE1 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL
::::::::::::::::::::::::::::::::::::::
NP_387 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL
370 380 390
>>NP_004623 (OMIM: 602074) 28S ribosomal protein S29, mi (398 aa)
initn: 2691 init1: 2691 opt: 2691 Z-score: 3141.3 bits: 590.1 E(85289): 3.1e-168
Smith-Waterman score: 2691; 100.0% identity (100.0% similar) in 398 aa overlap (1-398:1-398)
10 20 30 40 50 60
pF1KE1 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY
310 320 330 340 350 360
370 380 390
pF1KE1 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL
::::::::::::::::::::::::::::::::::::::
NP_004 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL
370 380 390
>>XP_016857782 (OMIM: 602074) PREDICTED: 28S ribosomal p (357 aa)
initn: 2400 init1: 2321 opt: 2328 Z-score: 2718.7 bits: 511.7 E(85289): 1.1e-144
Smith-Waterman score: 2328; 98.0% identity (98.6% similar) in 353 aa overlap (46-398:8-357)
20 30 40 50 60 70
pF1KE1 LDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHGDQHEGQHYNISPQDL
: ::: .. :::::::::::::::::::
XP_016 MMLKGITRLISRIHK---AKHGDQHEGQHYNISPQDL
10 20 30
80 90 100 110 120 130
pF1KE1 ETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKT
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE1 LSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQPLEASTWLKNFKTTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQPLEASTWLKNFKTTN
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE1 ERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAVGIVLKELKRQSSLGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAVGIVLKELKRQSSLGM
160 170 180 190 200 210
260 270 280 290 300 310
pF1KE1 FHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKNDWHGGAIVSALSQTGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKNDWHGGAIVSALSQTGS
220 230 240 250 260 270
320 330 340 350 360 370
pF1KE1 LFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPTEE
280 290 300 310 320 330
380 390
pF1KE1 GKKELLFLSNANPSLLERHCAYL
:::::::::::::::::::::::
XP_016 GKKELLFLSNANPSLLERHCAYL
340 350
>>NP_001186780 (OMIM: 602074) 28S ribosomal protein S29, (357 aa)
initn: 2400 init1: 2321 opt: 2328 Z-score: 2718.7 bits: 511.7 E(85289): 1.1e-144
Smith-Waterman score: 2328; 98.0% identity (98.6% similar) in 353 aa overlap (46-398:8-357)
20 30 40 50 60 70
pF1KE1 LDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHGDQHEGQHYNISPQDL
: ::: .. :::::::::::::::::::
NP_001 MMLKGITRLISRIHK---AKHGDQHEGQHYNISPQDL
10 20 30
80 90 100 110 120 130
pF1KE1 ETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKT
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE1 LSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQPLEASTWLKNFKTTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQPLEASTWLKNFKTTN
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE1 ERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAVGIVLKELKRQSSLGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAVGIVLKELKRQSSLGM
160 170 180 190 200 210
260 270 280 290 300 310
pF1KE1 FHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKNDWHGGAIVSALSQTGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKNDWHGGAIVSALSQTGS
220 230 240 250 260 270
320 330 340 350 360 370
pF1KE1 LFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPTEE
280 290 300 310 320 330
380 390
pF1KE1 GKKELLFLSNANPSLLERHCAYL
:::::::::::::::::::::::
NP_001 GKKELLFLSNANPSLLERHCAYL
340 350
>>XP_016857781 (OMIM: 602074) PREDICTED: 28S ribosomal p (357 aa)
initn: 2400 init1: 2321 opt: 2328 Z-score: 2718.7 bits: 511.7 E(85289): 1.1e-144
Smith-Waterman score: 2328; 98.0% identity (98.6% similar) in 353 aa overlap (46-398:8-357)
20 30 40 50 60 70
pF1KE1 LDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHGDQHEGQHYNISPQDL
: ::: .. :::::::::::::::::::
XP_016 MMLKGITRLISRIHK---AKHGDQHEGQHYNISPQDL
10 20 30
80 90 100 110 120 130
pF1KE1 ETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKT
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE1 LSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQPLEASTWLKNFKTTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQPLEASTWLKNFKTTN
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE1 ERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAVGIVLKELKRQSSLGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAVGIVLKELKRQSSLGM
160 170 180 190 200 210
260 270 280 290 300 310
pF1KE1 FHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKNDWHGGAIVSALSQTGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKNDWHGGAIVSALSQTGS
220 230 240 250 260 270
320 330 340 350 360 370
pF1KE1 LFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPTEE
280 290 300 310 320 330
380 390
pF1KE1 GKKELLFLSNANPSLLERHCAYL
:::::::::::::::::::::::
XP_016 GKKELLFLSNANPSLLERHCAYL
340 350
>>XP_005245538 (OMIM: 602074) PREDICTED: 28S ribosomal p (357 aa)
initn: 2400 init1: 2321 opt: 2328 Z-score: 2718.7 bits: 511.7 E(85289): 1.1e-144
Smith-Waterman score: 2328; 98.0% identity (98.6% similar) in 353 aa overlap (46-398:8-357)
20 30 40 50 60 70
pF1KE1 LDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHGDQHEGQHYNISPQDL
: ::: .. :::::::::::::::::::
XP_005 MMLKGITRLISRIHK---AKHGDQHEGQHYNISPQDL
10 20 30
80 90 100 110 120 130
pF1KE1 ETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKT
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE1 LSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQPLEASTWLKNFKTTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQPLEASTWLKNFKTTN
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE1 ERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAVGIVLKELKRQSSLGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAVGIVLKELKRQSSLGM
160 170 180 190 200 210
260 270 280 290 300 310
pF1KE1 FHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKNDWHGGAIVSALSQTGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKNDWHGGAIVSALSQTGS
220 230 240 250 260 270
320 330 340 350 360 370
pF1KE1 LFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPTEE
280 290 300 310 320 330
380 390
pF1KE1 GKKELLFLSNANPSLLERHCAYL
:::::::::::::::::::::::
XP_005 GKKELLFLSNANPSLLERHCAYL
340 350
>>NP_001186779 (OMIM: 602074) 28S ribosomal protein S29, (364 aa)
initn: 2093 init1: 2070 opt: 2081 Z-score: 2430.6 bits: 458.5 E(85289): 1.2e-128
Smith-Waterman score: 2362; 91.5% identity (91.5% similar) in 398 aa overlap (1-398:1-364)
10 20 30 40 50 60
pF1KE1 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDP----
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP
::::::::::::::::::::::::::::::
NP_001 ------------------------------VKTFSEACLMVRKPALELLHYLKNTSFAYP
60 70 80
130 140 150 160 170 180
pF1KE1 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ
90 100 110 120 130 140
190 200 210 220 230 240
pF1KE1 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV
150 160 170 180 190 200
250 260 270 280 290 300
pF1KE1 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND
210 220 230 240 250 260
310 320 330 340 350 360
pF1KE1 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY
270 280 290 300 310 320
370 380 390
pF1KE1 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL
::::::::::::::::::::::::::::::::::::::
NP_001 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL
330 340 350 360
>>XP_005245537 (OMIM: 602074) PREDICTED: 28S ribosomal p (364 aa)
initn: 2093 init1: 2070 opt: 2081 Z-score: 2430.6 bits: 458.5 E(85289): 1.2e-128
Smith-Waterman score: 2362; 91.5% identity (91.5% similar) in 398 aa overlap (1-398:1-364)
10 20 30 40 50 60
pF1KE1 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDP----
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP
::::::::::::::::::::::::::::::
XP_005 ------------------------------VKTFSEACLMVRKPALELLHYLKNTSFAYP
60 70 80
130 140 150 160 170 180
pF1KE1 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ
90 100 110 120 130 140
190 200 210 220 230 240
pF1KE1 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV
150 160 170 180 190 200
250 260 270 280 290 300
pF1KE1 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND
210 220 230 240 250 260
310 320 330 340 350 360
pF1KE1 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY
270 280 290 300 310 320
370 380 390
pF1KE1 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL
::::::::::::::::::::::::::::::::::::::
XP_005 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL
330 340 350 360
>>XP_016857780 (OMIM: 602074) PREDICTED: 28S ribosomal p (364 aa)
initn: 2093 init1: 2070 opt: 2081 Z-score: 2430.6 bits: 458.5 E(85289): 1.2e-128
Smith-Waterman score: 2362; 91.5% identity (91.5% similar) in 398 aa overlap (1-398:1-364)
10 20 30 40 50 60
pF1KE1 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDP----
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP
::::::::::::::::::::::::::::::
XP_016 ------------------------------VKTFSEACLMVRKPALELLHYLKNTSFAYP
60 70 80
130 140 150 160 170 180
pF1KE1 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ
90 100 110 120 130 140
190 200 210 220 230 240
pF1KE1 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV
150 160 170 180 190 200
250 260 270 280 290 300
pF1KE1 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND
210 220 230 240 250 260
310 320 330 340 350 360
pF1KE1 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY
270 280 290 300 310 320
370 380 390
pF1KE1 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL
::::::::::::::::::::::::::::::::::::::
XP_016 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL
330 340 350 360
398 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 21:08:24 2016 done: Sun Nov 6 21:08:25 2016
Total Scan time: 7.500 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]