FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1870, 391 aa
  1>>>pF1KE1870 391 - 391 aa - 391 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5874+/-0.000971; mu= 15.3470+/- 0.058
 mean_var=67.1221+/-13.215, 0's: 0 Z-trim(104.8): 18  B-trim: 0 in 0/51
 Lambda= 0.156546
 statistics sampled from 8057 (8068) to 8057 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.248), width:  16
 Scan time:  2.830

The best scores are:                                      opt bits E(32554)
CCDS7114.1 TRDMT1 gene_id:1787|Hs108|chr10         ( 391) 2543 583.4 1.2e-166


>>CCDS7114.1 TRDMT1 gene_id:1787|Hs108|chr10              (391 aa)
 initn: 2543 init1: 2543 opt: 2543  Z-score: 3105.4  bits: 583.4 E(32554): 1.2e-166
Smith-Waterman score: 2543; 99.7% identity (100.0% similar) in 391 aa overlap (1-391:1-391)

               10        20        30        40        50        60
pF1KE1 MEPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 MEPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 TLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLYILDILPRLQKLPKYILLEN
       ::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
CCDS71 TLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLEN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 VKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 QVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 KNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 KNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 IEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 IEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGF
              310       320       330       340       350       360

              370       380       390 
pF1KE1 PEKITVKQRYRLLGNSLNVHVVAKLIKILYE
       :::::::::::::::::::::::::::::::
CCDS71 PEKITVKQRYRLLGNSLNVHVVAKLIKILYE
              370       380       390 




391 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:43:40 2016 done: Sun Nov  6 05:43:41 2016
 Total Scan time:  2.830 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]