Result of FASTA (ccds) for
pFN21AE1867
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1867, 290 aa
1>>>pF1KE1867 290 - 290 aa - 290 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1627+/-0.000683; mu= 16.5927+/- 0.041
mean_var=71.6563+/-14.941, 0's: 0 Z-trim(110.7): 50 B-trim: 680 in 1/50
Lambda= 0.151512
statistics sampled from 11765 (11821) to 11765 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.363), width: 16
Scan time: 2.570
The best scores are: opt bits E(32554)
CCDS41421.1 CD1E gene_id:913|Hs108|chr1 ( 290) 2060 458.9 2e-129
CCDS41418.1 CD1E gene_id:913|Hs108|chr1 ( 376) 1874 418.3 4.1e-117
CCDS41417.1 CD1E gene_id:913|Hs108|chr1 ( 388) 1874 418.3 4.2e-117
CCDS41419.1 CD1E gene_id:913|Hs108|chr1 ( 321) 1728 386.4 1.5e-107
CCDS53387.1 CD1E gene_id:913|Hs108|chr1 ( 289) 1062 240.8 9.1e-64
CCDS1176.1 CD1B gene_id:910|Hs108|chr1 ( 333) 1015 230.5 1.3e-60
CCDS1174.1 CD1A gene_id:909|Hs108|chr1 ( 327) 1013 230.1 1.7e-60
CCDS1173.1 CD1D gene_id:912|Hs108|chr1 ( 335) 968 220.3 1.6e-57
CCDS1175.1 CD1C gene_id:911|Hs108|chr1 ( 333) 959 218.3 6.1e-57
CCDS53384.1 CD1E gene_id:913|Hs108|chr1 ( 231) 821 188.0 5.5e-48
CCDS53386.1 CD1E gene_id:913|Hs108|chr1 ( 286) 808 185.2 4.7e-47
CCDS53385.1 CD1E gene_id:913|Hs108|chr1 ( 298) 808 185.3 4.8e-47
CCDS41422.1 CD1E gene_id:913|Hs108|chr1 ( 101) 647 149.7 8.1e-37
CCDS41420.1 CD1E gene_id:913|Hs108|chr1 ( 187) 461 109.3 2.3e-24
CCDS53390.1 CD1E gene_id:913|Hs108|chr1 ( 199) 461 109.3 2.4e-24
CCDS53389.1 CD1E gene_id:913|Hs108|chr1 ( 132) 315 77.2 7e-15
CCDS53388.1 CD1E gene_id:913|Hs108|chr1 ( 144) 315 77.3 7.5e-15
>>CCDS41421.1 CD1E gene_id:913|Hs108|chr1 (290 aa)
initn: 2060 init1: 2060 opt: 2060 Z-score: 2437.3 bits: 458.9 E(32554): 2e-129
Smith-Waterman score: 2060; 99.7% identity (100.0% similar) in 290 aa overlap (1-290:1-290)
10 20 30 40 50 60
pF1KE1 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIRIVQASAGQFQLEYP
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
CCDS41 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
190 200 210 220 230 240
250 260 270 280 290
pF1KE1 WVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 WVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS
250 260 270 280 290
>>CCDS41418.1 CD1E gene_id:913|Hs108|chr1 (376 aa)
initn: 1956 init1: 1874 opt: 1874 Z-score: 2216.0 bits: 418.3 E(32554): 4.1e-117
Smith-Waterman score: 1874; 98.9% identity (100.0% similar) in 269 aa overlap (1-269:1-269)
10 20 30 40 50 60
pF1KE1 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIRIVQASAGQFQLEYP
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
CCDS41 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
190 200 210 220 230 240
250 260 270 280 290
pF1KE1 WVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS
:::::::::::::::::::::::::::..
CCDS41 WVMWMRGEQEQRGTQRGDVLPNADETWYLRATLDVAAGEAAGLSCRVKHSSLGGHDLIIH
250 260 270 280 290 300
>>CCDS41417.1 CD1E gene_id:913|Hs108|chr1 (388 aa)
initn: 1956 init1: 1874 opt: 1874 Z-score: 2215.8 bits: 418.3 E(32554): 4.2e-117
Smith-Waterman score: 1874; 98.9% identity (100.0% similar) in 269 aa overlap (1-269:1-269)
10 20 30 40 50 60
pF1KE1 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIRIVQASAGQFQLEYP
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
CCDS41 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
190 200 210 220 230 240
250 260 270 280 290
pF1KE1 WVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS
:::::::::::::::::::::::::::..
CCDS41 WVMWMRGEQEQRGTQRGDVLPNADETWYLRATLDVAAGEAAGLSCRVKHSSLGGHDLIIH
250 260 270 280 290 300
>>CCDS41419.1 CD1E gene_id:913|Hs108|chr1 (321 aa)
initn: 1728 init1: 1728 opt: 1728 Z-score: 2044.4 bits: 386.4 E(32554): 1.5e-107
Smith-Waterman score: 1728; 99.6% identity (100.0% similar) in 247 aa overlap (1-247:1-247)
10 20 30 40 50 60
pF1KE1 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIRIVQASAGQFQLEYP
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
CCDS41 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
190 200 210 220 230 240
250 260 270 280 290
pF1KE1 WVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS
:::::::
CCDS41 WVMWMRGGYSIFLILICLTVIVTLVILVVVDSRLKKQSPVFLMGANTQDTKNSRHQFCLA
250 260 270 280 290 300
>>CCDS53387.1 CD1E gene_id:913|Hs108|chr1 (289 aa)
initn: 1272 init1: 1062 opt: 1062 Z-score: 1258.3 bits: 240.8 E(32554): 9.1e-64
Smith-Waterman score: 1062; 98.7% identity (100.0% similar) in 150 aa overlap (120-269:21-170)
90 100 110 120 130 140
pF1KE1 LKNLQSLFQLYFHSFIRIVQASAGQFQLEYPFEIQILAGCRMNAPQIFLNMAYQGSDFLS
::::::::::::::::::::::::::::::
CCDS53 MLLLFLLFEGLCCPGENTADPFEIQILAGCRMNAPQIFLNMAYQGSDFLS
10 20 30 40 50
150 160 170 180 190 200
pF1KE1 FQGISWEPSPGAGIRAQNICKVLNRYLDIKEILQSLLGHTCPRFLAGLMEAGESELKRKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FQGISWEPSPGAGIRAQNICKVLNRYLDIKEILQSLLGHTCPRFLAGLMEAGESELKRKV
60 70 80 90 100 110
210 220 230 240 250 260
pF1KE1 KPEAWLSCGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQRGTQRGDVLPNADETWWI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::..
CCDS53 KPEAWLSCGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQRGTQRGDVLPNADETWYL
120 130 140 150 160 170
270 280 290
pF1KE1 FHLSHPDLFDCDSYPGHIGCS
CCDS53 RATLDVAAGEAAGLSCRVKHSSLGGHDLIIHWGGYSIFLILICLTVIVTLVILVVVDSRL
180 190 200 210 220 230
>>CCDS1176.1 CD1B gene_id:910|Hs108|chr1 (333 aa)
initn: 1063 init1: 614 opt: 1015 Z-score: 1201.9 bits: 230.5 E(32554): 1.3e-60
Smith-Waterman score: 1015; 54.8% identity (76.8% similar) in 272 aa overlap (1-269:1-263)
10 20 30 40 50 60
pF1KE1 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
:::: . . .. :: :. .:.:. ::...:::::.: .::...:::::
CCDS11 MLLLPFQLLAVLFPGGNS--EHAFQG-------PTSFHVIQTSSFTNSTWAQTQGSGWLD
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIRIVQASAGQFQLEYP
::: ::::. :: ::::::.:::: .:. .:. .:..:. .: : :: ::.::..::
CCDS11 DLQIHGWDSDSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYP
60 70 80 90 100 110
130 140 150 160 170
pF1KE1 FEIQILAGCRMNAPQI---FLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLD
:::: .:::.... :: : : :::: .. : ::: .: :::..: .. .:
CCDS11 FEIQGIAGCELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 IKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYP
: : .. :: .::::.: :...::...:.:.:::::::: ::::::::::::::::::::
CCDS11 IMETVRILLYETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYP
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE1 KPVWVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS
::::::::::::::.::: ::.::::. ::..
CCDS11 KPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRVKHSSLEGQDI
240 250 260 270 280 290
CCDS11 ILYWRNPTSIGSIVLAIIVPSLLLLLCLALWYMRRRSYQNIP
300 310 320 330
>>CCDS1174.1 CD1A gene_id:909|Hs108|chr1 (327 aa)
initn: 1029 init1: 678 opt: 1013 Z-score: 1199.7 bits: 230.1 E(32554): 1.7e-60
Smith-Waterman score: 1013; 54.6% identity (79.0% similar) in 271 aa overlap (3-269:1-262)
10 20 30 40 50
pF1KE1 MLLLFLLFEGLCC-PGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWL
.::::. : ::...: ..:. : :::.. .:: :::: .. ::::
CCDS11 MLFLLLPLLAVLPGDGNA--DGLK-------EPLSFHVTWIASFYNHSWKQNLVSGWL
10 20 30 40
60 70 80 90 100 110
pF1KE1 GDLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIRIVQASAGQFQLEY
.::::: ::. .:: :: :::.::::..: :.:..::.. .. .. : ..:.::
CCDS11 SDLQTHTWDSNSSTIVFLCPWSRGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEY
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE1 PFEIQILAGCRMNAPQI---FLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYL
:::::. .::.... .. ::..:::::::.:::. :: : : :: :...:::::.
CCDS11 PFEIQVTGGCELHSGKVSGSFLQLAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLNQNQ
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE1 DIKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFY
..: ..::. :::::. ::..::...:.:.:::::::: :::::::.:::::::::::
CCDS11 HENDITHNLLSDTCPRFILGLLDAGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFY
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE1 PKPVWVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS
:::::::::::::::.::::::.::.:: ::..
CCDS11 PKPVWVMWMRGEQEQQGTQRGDILPSADGTWYLRATLEVAAGEAADLSCRVKHSSLEGQD
230 240 250 260 270 280
CCDS11 IVLYWEHHSSVGFIILAVIVPLLLLIGLALWFRKRCFC
290 300 310 320
>>CCDS1173.1 CD1D gene_id:912|Hs108|chr1 (335 aa)
initn: 1013 init1: 637 opt: 968 Z-score: 1146.4 bits: 220.3 E(32554): 1.6e-57
Smith-Waterman score: 968; 53.3% identity (76.7% similar) in 270 aa overlap (3-269:4-263)
10 20 30 40 50
pF1KE1 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWL
:::::. .: .. .:: : . .: :: ::::: ::....: .::
CCDS11 MGCLLFLLLWALLQAWGSAEVPQRL----------FPLRCLQISSFANSSWTRTDGLAWL
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 GDLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIRIVQASAGQFQLEY
:.::::.:.. :.: :::::.:.:: :. ..:: .:..: :: : :. : ...: :
CCDS11 GELQTHSWSNDSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSY
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 PFEIQILAGCRM---NAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYL
:.:.:. :::.. :: . :...:.::.:.::::: ::::. : . .. .:::.
CCDS11 PLELQVSAGCEVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 DIKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFY
.: .: ::. :::.:..::.:.:.::::..:::.:::: ::::::::: :::::::::
CCDS11 WTRETVQWLLNGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFY
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE1 PKPVWVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS
:::::: ::::::::.::: ::.::::::::..
CCDS11 PKPVWVKWMRGEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQD
240 250 260 270 280 290
CCDS11 IVLYWGGSYTSMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL
300 310 320 330
>>CCDS1175.1 CD1C gene_id:911|Hs108|chr1 (333 aa)
initn: 943 init1: 419 opt: 959 Z-score: 1135.8 bits: 218.3 E(32554): 6.1e-57
Smith-Waterman score: 959; 50.5% identity (77.7% similar) in 273 aa overlap (1-269:1-264)
10 20 30 40 50 60
pF1KE1 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
::.: .:. .: :: ..: :..:..::...: ::.:.:::...:::::
CCDS11 MLFLQFLLLALLLPGGDNAD---------ASQEHVSFHVIQIFSFVNQSWARGQGSGWLD
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIRIVQASAGQFQLEYP
.:::::::. ::: ::. ::.::::..::..:. ::..:. .. : .: :.: .::
CCDS11 ELQTHGWDSESGTIIFLHNWSKGNFSNEELSDLELLFRFYLFGLTREIQDHASQDYSKYP
60 70 80 90 100 110
130 140 150 160 170
pF1KE1 FEIQILAGCRMNA---PQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLN-RYL
::.:. :::.... :. :...:..: :.::::. .: :::: : ::..:..:: .:
CCDS11 FEVQVKAGCELHSGKSPEGFFQVAFNGLDLLSFQNTTWVPSPGCGSLAQSVCHLLNHQYE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 DIKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFY
. : . .:. :::::: ::..::. ..:.:.:::::: :: : :.: ::::.::::
CCDS11 GVTETVYNLIRSTCPRFLLGLLDAGKMYVHRQVRPEAWLSSRPSLGSGQLLLVCHASGFY
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE1 PKPVWVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS
:::::: :::.:::: ::..::.::::: ::..
CCDS11 PKPVWVTWMRNEQEQLGTKHGDILPNADGTWYLQVILEVASEEPAGLSCRVRHSSLGGQD
240 250 260 270 280 290
CCDS11 IILYWGHHFSMNWIALVVIVPLVILIVLVLWFKKHCSYQDIL
300 310 320 330
>>CCDS53384.1 CD1E gene_id:913|Hs108|chr1 (231 aa)
initn: 830 init1: 804 opt: 821 Z-score: 975.0 bits: 188.0 E(32554): 5.5e-48
Smith-Waterman score: 920; 62.8% identity (63.6% similar) in 247 aa overlap (1-247:1-157)
10 20 30 40 50 60
pF1KE1 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIRIVQASAGQFQLEYP
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS53 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLE--
70 80 90 100 110
130 140 150 160 170 180
pF1KE1 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
CCDS53 ------------------------------------------------------------
190 200 210 220 230 240
pF1KE1 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
.:::::::::::::::::::::::::::::::
CCDS53 ----------------------------LKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
120 130 140 150
250 260 270 280 290
pF1KE1 WVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS
:::::::
CCDS53 WVMWMRGGYSIFLILICLTVIVTLVILVVVDSRLKKQSPVFLMGANTQDTKNSRHQFCLA
160 170 180 190 200 210
290 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 11:09:19 2016 done: Sun Nov 6 11:09:19 2016
Total Scan time: 2.570 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]