FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1859, 379 aa
  1>>>pF1KE1859 379 - 379 aa - 379 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9076+/-0.000836; mu= 8.0205+/- 0.051
 mean_var=179.8982+/-36.403, 0's: 0 Z-trim(114.3): 3  B-trim: 863 in 1/51
 Lambda= 0.095623
 statistics sampled from 14851 (14853) to 14851 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.456), width:  16
 Scan time:  1.620

The best scores are:                                      opt bits E(32554)
CCDS6140.1 FNTA gene_id:2339|Hs108|chr8            ( 379) 2596 369.6 2.5e-102


>>CCDS6140.1 FNTA gene_id:2339|Hs108|chr8                 (379 aa)
 initn: 2596 init1: 2596 opt: 2596  Z-score: 1950.6  bits: 369.6 E(32554): 2.5e-102
Smith-Waterman score: 2596; 100.0% identity (100.0% similar) in 379 aa overlap (1-379:1-379)

               10        20        30        40        50        60
pF1KE1 MAATEGVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASPMDDGFVSLDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MAATEGVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASPMDDGFVSLDS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 PSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 RDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 YFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 YFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 DLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 DLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIG
              310       320       330       340       350       360

              370         
pF1KE1 RSLQSKHSTENDSPTNVQQ
       :::::::::::::::::::
CCDS61 RSLQSKHSTENDSPTNVQQ
              370         




379 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:29:31 2016 done: Sun Nov  6 21:29:31 2016
 Total Scan time:  1.620 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]