FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1856, 375 aa
  1>>>pF1KE1856 375 - 375 aa - 375 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4748+/-0.00095; mu= 14.9029+/- 0.056
 mean_var=60.9433+/-12.448, 0's: 0 Z-trim(104.3): 24  B-trim: 451 in 2/49
 Lambda= 0.164290
 statistics sampled from 7803 (7812) to 7803 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.615), E-opt: 0.2 (0.24), width:  16
 Scan time:  2.290

The best scores are:                                      opt bits E(32554)
CCDS41567.1 AS3MT gene_id:57412|Hs108|chr10        ( 375) 2522 606.5 1.2e-173


>>CCDS41567.1 AS3MT gene_id:57412|Hs108|chr10             (375 aa)
 initn: 2522 init1: 2522 opt: 2522  Z-score: 3231.1  bits: 606.5 E(32554): 1.2e-173
Smith-Waterman score: 2522; 100.0% identity (100.0% similar) in 375 aa overlap (1-375:1-375)

               10        20        30        40        50        60
pF1KE1 MAALRDAEIQKDVQTYYGQVLKRSADLQTNGCVTTARPVPKHIREALQNVHEEVALRYYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MAALRDAEIQKDVQTYYGQVLKRSADLQTNGCVTTARPVPKHIREALQNVHEEVALRYYG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 CGLVIPEHLENCWILDLGSGSGRDCYVLSQLVGEKGHVTGIDMTKGQVEVAEKYLDYHME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CGLVIPEHLENCWILDLGSGSGRDCYVLSQLVGEKGHVTGIDMTKGQVEVAEKYLDYHME
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 KYGFQASNVTFIHGYIEKLGEAGIKNESHDIVVSNCVINLVPDKQQVLQEAYRVLKHGGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KYGFQASNVTFIHGYIEKLGEAGIKNESHDIVVSNCVINLVPDKQQVLQEAYRVLKHGGE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LYFSDVYTSLELPEEIRTHKVLWGECLGGALYWKELAVLAQKIGFCPPRLVTANLITIQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LYFSDVYTSLELPEEIRTHKVLWGECLGGALYWKELAVLAQKIGFCPPRLVTANLITIQN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 KELERVIGDCRFVSATFRLFKHSKTGPTKRCQVIYNGGITGHEKELMFDANFTFKEGEIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KELERVIGDCRFVSATFRLFKHSKTGPTKRCQVIYNGGITGHEKELMFDANFTFKEGEIV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 EVDEETAAILKNSRFAQDFLIRPIGEKLPTSGGCSALELKDIITDPFKLAEESDSMKSRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EVDEETAAILKNSRFAQDFLIRPIGEKLPTSGGCSALELKDIITDPFKLAEESDSMKSRC
              310       320       330       340       350       360

              370     
pF1KE1 VPDAAGGCCGTKKSC
       :::::::::::::::
CCDS41 VPDAAGGCCGTKKSC
              370     




375 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 11:07:43 2016 done: Sun Nov  6 11:07:43 2016
 Total Scan time:  2.290 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]