FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1855, 373 aa
  1>>>pF1KE1855 373 - 373 aa - 373 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6465+/-0.000869; mu= 14.3941+/- 0.052
 mean_var=62.7630+/-12.517, 0's: 0 Z-trim(106.1): 11  B-trim: 15 in 1/50
 Lambda= 0.161891
 statistics sampled from 8804 (8809) to 8804 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.271), width:  16
 Scan time:  2.790

The best scores are:                                      opt bits E(32554)
CCDS30871.1 PGLYRP4 gene_id:57115|Hs108|chr1       ( 373) 2547 603.5 9.6e-173
CCDS1035.1 PGLYRP3 gene_id:114771|Hs108|chr1       ( 341) 1581 377.9 7.3e-105
CCDS12680.1 PGLYRP1 gene_id:8993|Hs108|chr19       ( 196)  552 137.5 9.8e-33
CCDS12330.2 PGLYRP2 gene_id:114770|Hs108|chr19     ( 576)  288 76.0 9.6e-14


>>CCDS30871.1 PGLYRP4 gene_id:57115|Hs108|chr1            (373 aa)
 initn: 2547 init1: 2547 opt: 2547  Z-score: 3214.8  bits: 603.5 E(32554): 9.6e-173
Smith-Waterman score: 2547; 99.5% identity (99.7% similar) in 373 aa overlap (1-373:1-373)

               10        20        30        40        50        60
pF1KE1 MLPWLLVFSALGLQAWGDSSWNKTQAKQVSEGLQYLFENISQLTEKGLPTDVSTTVSRKA
       ::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MLPWLLVFSALGIQAWGDSSWNKTQAKQVSEGLQYLFENISQLTEKGLPTDVSTTVSRKA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 WGAEAVGCSIQLTTPVNVLVIHHVPGLECHDQTVCSQRLRELQAHHVHNNSGCDVAYNFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 WGAEAVGCSIQLTTPVNVLVIHHVPGLECHDQTVCSQRLRELQAHHVHNNSGCDVAYNFL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VGDDGRVYEGVGWNIQGVHTQGYNNISLGFAFFGTKKGHSPSPAALSAMENLITYAVQKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VGDDGRVYEGVGWNIQGVHTQGYNNISLGFAFFGTKKGHSPSPAALSAMENLITYAVQKG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 HLSSSYVQPLLVKGENCLAPRQKTSLKKACPGVVPRSVWGARETHCPRMTLPAKYGIIIH
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 HLSSSYVQPLLGKGENCLAPRQKTSLKKACPGVVPRSVWGARETHCPRMTLPAKYGIIIH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 TAGRTCNISDECRLLVRDIQSFYIDRLKSCDIGYNFLVGQDGAIYEGVGWNVQGSSTPGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TAGRTCNISDECRLLVRDIQSFYIDRLKSCDIGYNFLVGQDGAIYEGVGWNVQGSSTPGY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 DDIALGITFMGTFTGIPPNAAALEAAQDLIQCAMVKGYLTPNYLLVGHSDVARTLSPGQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DDIALGITFMGTFTGIPPNAAALEAAQDLIQCAMVKGYLTPNYLLVGHSDVARTLSPGQA
              310       320       330       340       350       360

              370   
pF1KE1 LYNIISTWPHFKH
       :::::::::::::
CCDS30 LYNIISTWPHFKH
              370   

>>CCDS1035.1 PGLYRP3 gene_id:114771|Hs108|chr1            (341 aa)
 initn: 1656 init1: 1581 opt: 1581  Z-score: 1996.1  bits: 377.9 E(32554): 7.3e-105
Smith-Waterman score: 1592; 62.1% identity (78.8% similar) in 372 aa overlap (2-373:4-341)

                 10        20        30        40        50        
pF1KE1   MLPWLLVFSALGLQAWGDSSWNKTQAKQVSEGLQYLFENISQLTEKGLPTDVSTTVSR
          :::::.:  ::::::                                  :. : :::
CCDS10 MGTLPWLLAFFILGLQAW----------------------------------DTPTIVSR
               10                                          20      

       60        70        80        90       100       110        
pF1KE1 KAWGAEAVGCSIQLTTPVNVLVIHHVPGLECHDQTVCSQRLRELQAHHVHNNSGCDVAYN
       : :::. ..:   :: ::  ..  ..::..:..:.:::: :: ::.: :.. . ::::::
CCDS10 KEWGARPLACRALLTLPVAYIITDQLPGMQCQQQSVCSQMLRGLQSHSVYTIGWCDVAYN
         30        40        50        60        70        80      

      120       130       140       150       160       170        
pF1KE1 FLVGDDGRVYEGVGWNIQGVHTQGYNNISLGFAFFGTKKGHSPSPAALSAMENLITYAVQ
       :::::::::::::::::::.:::::::::::.::::.: : ::::::::: :.::.::.:
CCDS10 FLVGDDGRVYEGVGWNIQGLHTQGYNNISLGIAFFGNKIGSSPSPAALSAAEGLISYAIQ
         90       100       110       120       130       140      

      180       190       200       210       220       230        
pF1KE1 KGHLSSSYVQPLLVKGENCLAPRQKTSLKKACPGVVPRSVWGARETHCPRMTLPAKYGII
       :::::  :.::::.: :.:: :.. .  .:.::... ::.: :::::::.:.::::: ::
CCDS10 KGHLSPRYIQPLLLKEETCLDPQHPVMPRKVCPNIIKRSAWEARETHCPKMNLPAKYVII
        150       160       170       180       190       200      

      240       250       260       270       280       290        
pF1KE1 IHTAGRTCNISDECRLLVRDIQSFYIDRLKSCDIGYNFLVGQDGAIYEGVGWNVQGSSTP
       ::::: .:..: .:. .::.::::..:  . :::::.:::::::..::::::..::: : 
CCDS10 IHTAGTSCTVSTDCQTVVRNIQSFHMDTRNFCDIGYHFLVGQDGGVYEGVGWHIQGSHTY
        210       220       230       240       250       260      

      300       310       320       330       340       350        
pF1KE1 GYDDIALGITFMGTFTGIPPNAAALEAAQDLIQCAMVKGYLTPNYLLVGHSDVARTLSPG
       :..::::::.:.: :.  :::::::::::::::::.:.:::::::::.:::::.  ::::
CCDS10 GFNDIALGIAFIGYFVEKPPNAAALEAAQDLIQCAVVEGYLTPNYLLMGHSDVVNILSPG
        270       280       290       300       310       320      

      360       370   
pF1KE1 QALYNIISTWPHFKH
       :::::::::::::::
CCDS10 QALYNIISTWPHFKH
        330       340 

>>CCDS12680.1 PGLYRP1 gene_id:8993|Hs108|chr19            (196 aa)
 initn: 483 init1: 253 opt: 552  Z-score: 701.2  bits: 137.5 E(32554): 9.8e-33
Smith-Waterman score: 552; 41.2% identity (69.5% similar) in 177 aa overlap (198-372:18-194)

       170       180       190       200       210       220       
pF1KE1 AMENLITYAVQKGHLSSSYVQPLLVKGENCLAPRQKTSLKKACPGVVPRSVWGARETHCP
                                     :.  :.:     :  .:::. : :  ..: 
CCDS12              MSRRSMLLAWALPSLLRLGAAQETEDPACCSPIVPRNEWKALASECA
                            10        20        30        40       

        230       240       250       260       270       280      
pF1KE1 R-MTLPAKYGIIIHTAGRTCNISDECRLLVRDIQSFYIDRLKSCDIGYNFLVGQDGAIYE
       . ..:: .: .. :::: .::    :.  .:..: ...  :  ::.:::::.:.:: .::
CCDS12 QHLSLPLRYVVVSHTAGSSCNTPASCQQQARNVQHYHMKTLGWCDVGYNFLIGEDGLVYE
        50        60        70        80        90       100       

        290        300       310       320       330       340     
pF1KE1 GVGWNVQGSSTPG-YDDIALGITFMGTFTGIPPNAAALEAAQDLIQCAMVKGYLTPNYLL
       : :::  :. .   .. ...::.:::..    :.  :..::: :. :....: :  ::.:
CCDS12 GRGWNFTGAHSGHLWNPMSIGISFMGNYMDRVPTPQAIRAAQGLLACGVAQGALRSNYVL
       110       120       130       140       150       160       

         350       360       370    
pF1KE1 VGHSDVARTLSPGQALYNIISTWPHFKH 
        :: :: ::::::. ::..:..:::..  
CCDS12 KGHRDVQRTLSPGNQLYHLIQNWPHYRSP
       170       180       190      

>>CCDS12330.2 PGLYRP2 gene_id:114770|Hs108|chr19          (576 aa)
 initn: 436 init1: 236 opt: 288  Z-score: 360.3  bits: 76.0 E(32554): 9.6e-14
Smith-Waterman score: 411; 37.7% identity (67.7% similar) in 167 aa overlap (210-371:379-545)

     180       190       200       210       220        230        
pF1KE1 GHLSSSYVQPLLVKGENCLAPRQKTSLKKACPGVVPRSVWGARETHC-PRMT-LPAKYGI
                                     ::.. ::  :::   .  :..  ::  .  
CCDS12 VHLQLQCMSQEQLAQVAANATKEFTEAFLGCPAIHPRCRWGAAPYRGRPKLLQLPLGFLY
      350       360       370       380       390       400        

       240         250       260       270       280       290     
pF1KE1 IIHT--AGRTCNISDECRLLVRDIQSFYIDRLKSCDIGYNFLVGQDGAIYEGVGWNVQGS
       . ::   .  :.   .:   .:..: .. :     ::::.:.::.:: .::: ::.  :.
CCDS12 VHHTYVPAPPCTDFTRCAANMRSMQRYHQDTQGWGDIGYSFVVGSDGYVYEGRGWHWVGA
      410       420       430       440       450       460        

         300       310       320        330       340       350    
pF1KE1 STPGYDDIALGITFMGTFTGIPPNAAALEAAQD-LIQCAMVKGYLTPNYLLVGHSDVART
        : :... ..:....:..:.  :. :::....: : .::.  : : :.: :.:: ...::
CCDS12 HTLGHNSRGFGVAIVGNYTAALPTEAALRTVRDTLPSCAVRAGLLRPDYALLGHRQLVRT
      470       480       490       500       510       520        

          360       370                                
pF1KE1 LSPGQALYNIISTWPHFKH                             
         ::.::.... :::::                               
CCDS12 DCPGDALFDLLRTWPHFTATVKPRPARSVSKRSRREPPPRTLPATDLQ
      530       540       550       560       570      




373 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:41:10 2016 done: Sun Nov  6 12:41:11 2016
 Total Scan time:  2.790 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]