FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1850, 369 aa
  1>>>pF1KE1850 369 - 369 aa - 369 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3657+/-0.000876; mu= 16.0978+/- 0.053
 mean_var=67.5607+/-13.686, 0's: 0 Z-trim(106.5): 27  B-trim: 4 in 1/49
 Lambda= 0.156037
 statistics sampled from 8985 (9003) to 8985 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.277), width:  16
 Scan time:  2.320

The best scores are:                                      opt bits E(32554)
CCDS5042.1 COQ3 gene_id:51805|Hs108|chr6           ( 369) 2470 565.0 3.6e-161


>>CCDS5042.1 COQ3 gene_id:51805|Hs108|chr6                (369 aa)
 initn: 2470 init1: 2470 opt: 2470  Z-score: 3006.9  bits: 565.0 E(32554): 3.6e-161
Smith-Waterman score: 2470; 99.5% identity (100.0% similar) in 369 aa overlap (1-369:1-369)

               10        20        30        40        50        60
pF1KE1 MWSGRKLGSSGGWFLRVLGPGGCNTKAARPLISSAVYVKNQLSGTLQIKPGVFNEYRTIW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MWSGRKLGSSGGWFLRVLGPGGCNTKAARPLISSAVYVKNQLSGTLQIKPGVFNEYRTIW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FKSYRTIFSCLNRIKSFRYPWARLYSTSQTTVDSGEVKTFLALAHKWWDEQGVYAPLHSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 FKSYRTIFSCLNRIKSFRYPWARLYSTSQTTVDSGEVKTFLALAHKWWDEQGVYAPLHSM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 NDLRVPFIRDNLLKTIPNHQPGKPLLGMKILDVGCGGGLLTEPLGRLGASVIGIDPVDEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 NDLRVPFIRDNLLKTIPNHQPGKPLLGMKILDVGCGGGLLTEPLGRLGASVIGIDPVDEN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 IKTAQCHKSFDPVLDKRIEYRVCSLEEIVEETAETFDAVVASEVVEHVIDLETFLQCCCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 IKTAQCHKSFDPVLDKRIEYRVCSLEEIVEETAETFDAVVASEVVEHVIDLETFLQCCCQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 VLKPGGSLFITTINKTQLSYALGIVFSEQIAGIVPKGTHTWEKFVSPETLESILESNGLS
       :::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS50 VLKPGGSLFITTINKTQLSYALGIVFSEQIASIVPKGTHTWEKFVSPETLESILESNGLS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 VQTVVGMLYNPFSGYWHWSENTSLNYAAHAVKSRVQEHPASAEFVLKGETEELQANACTN
       ::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
CCDS50 VQTVVGMLYNPFSGYWHWSENTSLNYAAYAVKSRVQEHPASAEFVLKGETEELQANACTN
              310       320       330       340       350       360

                
pF1KE1 PAVHEKLKK
       :::::::::
CCDS50 PAVHEKLKK
                




369 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:42:30 2016 done: Sun Nov  6 16:42:30 2016
 Total Scan time:  2.320 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]