FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1849, 365 aa
  1>>>pF1KE1849 365 - 365 aa - 365 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2763+/-0.000649; mu= 17.6648+/- 0.039
 mean_var=76.9396+/-15.413, 0's: 0 Z-trim(111.9): 7  B-trim: 12 in 1/51
 Lambda= 0.146217
 statistics sampled from 12765 (12766) to 12765 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.392), width:  16
 Scan time:  2.390

The best scores are:                                      opt bits E(32554)
CCDS3402.2 TRMT44 gene_id:152992|Hs108|chr4        ( 757) 2593 556.1 3.5e-158


>>CCDS3402.2 TRMT44 gene_id:152992|Hs108|chr4             (757 aa)
 initn: 2593 init1: 2593 opt: 2593  Z-score: 2953.4  bits: 556.1 E(32554): 3.5e-158
Smith-Waterman score: 2593; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:393-757)

                                             10        20        30
pF1KE1                               MYGPQTQLEEDAITPNDKTLFPDVDWLIGN
                                     ::::::::::::::::::::::::::::::
CCDS34 GCGNGLLVHILSSEGHPGRGIDVRRRKIWDMYGPQTQLEEDAITPNDKTLFPDVDWLIGN
            370       380       390       400       410       420  

               40        50        60        70        80        90
pF1KE1 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC
            430       440       450       460       470       480  

              100       110       120       130       140       150
pF1KE1 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS
            490       500       510       520       530       540  

              160       170       180       190       200       210
pF1KE1 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA
            550       560       570       580       590       600  

              220       230       240       250       260       270
pF1KE1 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRL
            610       620       630       640       650       660  

              280       290       300       310       320       330
pF1KE1 KRECGGLQTLLRNSHQVFQVVNGRVHIRDWREETLWKTKQPEAKQRLLSEACKTRLCWFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KRECGGLQTLLRNSHQVFQVVNGRVHIRDWREETLWKTKQPEAKQRLLSEACKTRLCWFF
            670       680       690       700       710       720  

              340       350       360     
pF1KE1 MHHPDGCALSTDCCPFAHGPAELRPPRTTPRKKIS
       :::::::::::::::::::::::::::::::::::
CCDS34 MHHPDGCALSTDCCPFAHGPAELRPPRTTPRKKIS
            730       740       750       




365 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:33:36 2016 done: Sun Nov  6 17:33:36 2016
 Total Scan time:  2.390 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]