FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1836, 354 aa
  1>>>pF1KE1836 354 - 354 aa - 354 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0040+/-0.000988; mu= 14.6234+/- 0.059
 mean_var=129.4029+/-25.360, 0's: 0 Z-trim(109.4): 46  B-trim: 50 in 1/50
 Lambda= 0.112746
 statistics sampled from 10844 (10884) to 10844 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.334), width:  16
 Scan time:  2.740

The best scores are:                                      opt bits E(32554)
CCDS14166.1 VEGFD gene_id:2277|Hs108|chrX          ( 354) 2546 425.4 3.7e-119
CCDS43285.1 VEGFC gene_id:7424|Hs108|chr4          ( 419)  865 152.0 8.4e-37


>>CCDS14166.1 VEGFD gene_id:2277|Hs108|chrX               (354 aa)
 initn: 2546 init1: 2546 opt: 2546  Z-score: 2252.8  bits: 425.4 E(32554): 3.7e-119
Smith-Waterman score: 2546; 100.0% identity (100.0% similar) in 354 aa overlap (1-354:1-354)

               10        20        30        40        50        60
pF1KE1 MYREWVVVNVFMMLYVQLVQGSSNEHGPVKRSSQSTLERSEQQIRAASSLEELLRITHSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MYREWVVVNVFMMLYVQLVQGSSNEHGPVKRSSQSTLERSEQQIRAASSLEELLRITHSE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DWKLWRCRLRLKSFTSMDSRSASHRSTRFAATFYDIETLKVIDEEWQRTQCSPRETCVEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DWKLWRCRLRLKSFTSMDSRSASHRSTRFAATFYDIETLKVIDEEWQRTQCSPRETCVEV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 ASELGKSTNTFFKPPCVNVFRCGGCCNEESLICMNTSTSYISKQLFEISVPLTSVPELVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ASELGKSTNTFFKPPCVNVFRCGGCCNEESLICMNTSTSYISKQLFEISVPLTSVPELVP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VKVANHTGCKCLPTAPRHPYSIIRRSIQIPEEDRCSHSKKLCPIDMLWDSNKCKCVLQEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VKVANHTGCKCLPTAPRHPYSIIRRSIQIPEEDRCSHSKKLCPIDMLWDSNKCKCVLQEE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 NPLAGTEDHSHLQEPALCGPHMMFDEDRCECVCKTPCPKDLIQHPKNCSCFECKESLETC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NPLAGTEDHSHLQEPALCGPHMMFDEDRCECVCKTPCPKDLIQHPKNCSCFECKESLETC
              250       260       270       280       290       300

              310       320       330       340       350    
pF1KE1 CQKHKLFHPDTCSCEDRCPFHTRPCASGKTACAKHCRFPKEKRAAQGPHSRKNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 CQKHKLFHPDTCSCEDRCPFHTRPCASGKTACAKHCRFPKEKRAAQGPHSRKNP
              310       320       330       340       350    

>>CCDS43285.1 VEGFC gene_id:7424|Hs108|chr4               (419 aa)
 initn: 826 init1: 508 opt: 865  Z-score: 774.2  bits: 152.0 E(32554): 8.4e-37
Smith-Waterman score: 891; 39.4% identity (62.8% similar) in 360 aa overlap (41-341:57-404)

               20        30        40        50        60        70
pF1KE1 FMMLYVQLVQGSSNEHGPVKRSSQSTLERSEQQIRAASSLEELLRITHSEDWKLWRCRLR
                                     :.:.:..::..::. . . : ::...:.::
CCDS43 AAAAAFESGLDLSDAEPDAGEATAYASKDLEEQLRSVSSVDELMTVLYPEYWKMYKCQLR
         30        40        50        60        70        80      

                     80        90       100       110       120    
pF1KE1 LKSF------TSMDSRSASHRSTRFAATFYDIETLKVIDEEWQRTQCSPRETCVEVASEL
         ..      ....::.  ... .:::. :. : :: ::.::..::: :::.:..:..:.
CCDS43 KGGWQHNREQANLNSRT--EETIKFAAAHYNTEILKSIDNEWRKTQCMPREVCIDVGKEF
         90       100         110       120       130       140    

          130       140       150       160       170       180    
pF1KE1 GKSTNTFFKPPCVNVFRCGGCCNEESLICMNTSTSYISKQLFEISVPLTSVPELVPVKVA
       : .::::::::::.:.::::::: :.: ::::::::.:: ::::.:::.. :. : .. :
CCDS43 GVATNTFFKPPCVSVYRCGGCCNSEGLQCMNTSTSYLSKTLFEITVPLSQGPKPVTISFA
          150       160       170       180       190       200    

          190         200         210       220       230       240
pF1KE1 NHTGCKCLPTAP--RHPYSIIRRSIQ--IPEEDRCSHSKKLCPIDMLWDSNKCKCVLQEE
       :::.:.:.      :. .::::::.   .:.   :. ..: :: ...:... :.:. ::.
CCDS43 NHTSCRCMSKLDVYRQVHSIIRRSLPATLPQ---CQAANKTCPTNYMWNNHICRCLAQED
          210       220       230          240       250       260 

                   250                           260               
pF1KE1 ---NPLAGTE--DHSH--------LQE------------PALCGPHMM------------
          .  :: .  :  :        :.:            :: ::::              
CCDS43 FMFSSDAGDDSTDGFHDICGPNKELDEETCQCVCRAGLRPASCGPHKELDRNSCQCVCKN
             270       280       290       300       310       320 

                       270       280       290       300       310 
pF1KE1 ------------FDEDRCECVCKTPCPKDLIQHPKNCSCFECKESLETCCQKHKLFHPDT
                   :::. :.::::  ::..   .: .:.: :: :: . :  : : :: .:
CCDS43 KLFPSQCGANREFDENTCQCVCKRTCPRNQPLNPGKCAC-ECTESPQKCLLKGKKFHHQT
             330       340       350       360        370       380

             320       330       340       350      
pF1KE1 CSCEDRCPFHTRPCASGKTACAKHCRFPKEKRAAQGPHSRKNP  
       :::      . :::.. . ::     . .:               
CCDS43 CSC------YRRPCTNRQKACEPGFSYSEEVCRCVPSYWKRPQMS
                    390       400       410         




354 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:52:05 2016 done: Sun Nov  6 12:52:05 2016
 Total Scan time:  2.740 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]