FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1821, 335 aa
  1>>>pF1KE1821 335 - 335 aa - 335 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1753+/-0.000298; mu= 13.5614+/- 0.019
 mean_var=97.4473+/-19.638, 0's: 0 Z-trim(119.8): 1  B-trim: 0 in 0/55
 Lambda= 0.129924
 statistics sampled from 34238 (34239) to 34238 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.401), width:  16
 Scan time:  8.950

The best scores are:                                      opt bits E(85289)
NP_444281 (OMIM: 612763) transcriptional adapter 1 ( 335) 2255 432.3 6.9e-121


>>NP_444281 (OMIM: 612763) transcriptional adapter 1 [Ho  (335 aa)
 initn: 2255 init1: 2255 opt: 2255  Z-score: 2291.4  bits: 432.3 E(85289): 6.9e-121
Smith-Waterman score: 2255; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335)

               10        20        30        40        50        60
pF1KE1 MATFVSELEAAKKNLSEALGDNVKQYWANLKLWFKQKISKEEFDLEAHRLLTQDNVHSHN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_444 MATFVSELEAAKKNLSEALGDNVKQYWANLKLWFKQKISKEEFDLEAHRLLTQDNVHSHN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DFLLAILTRCQILVSTPDGAGSLPWPGGSAAKPGKPKGKKKLSSVRQKFDHRFQPQNPLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_444 DFLLAILTRCQILVSTPDGAGSLPWPGGSAAKPGKPKGKKKLSSVRQKFDHRFQPQNPLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GAQQFVAKDPQDDDDLKLCSHTMMLPTRGQLEGRMIVTAYEHGLDNVTEEAVSAVVYAVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_444 GAQQFVAKDPQDDDDLKLCSHTMMLPTRGQLEGRMIVTAYEHGLDNVTEEAVSAVVYAVE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 NHLKDILTSVVSRRKAYRLRDGHFKYAFGSNVTPQPYLKNSVVAYNNLIESPPAFTAPCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_444 NHLKDILTSVVSRRKAYRLRDGHFKYAFGSNVTPQPYLKNSVVAYNNLIESPPAFTAPCA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 GQNPASHPPPDDAEQQAALLLACSGDTLPASLPPVNMYDLFEALQVHREVIPTHTVYALN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_444 GQNPASHPPPDDAEQQAALLLACSGDTLPASLPPVNMYDLFEALQVHREVIPTHTVYALN
              250       260       270       280       290       300

              310       320       330     
pF1KE1 IERIITKLWHPNHEELQQDKVHRQRLAAKEGLLLC
       :::::::::::::::::::::::::::::::::::
NP_444 IERIITKLWHPNHEELQQDKVHRQRLAAKEGLLLC
              310       320       330     




335 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:49:43 2016 done: Sun Nov  6 18:49:44 2016
 Total Scan time:  8.950 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]