Result of FASTA (ccds) for
pFN21AE1814
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1814, 329 aa
1>>>pF1KE1814 329 - 329 aa - 329 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5153+/-0.000713; mu= 11.4038+/- 0.043
mean_var=97.2141+/-19.223, 0's: 0 Z-trim(112.2): 13 B-trim: 0 in 0/51
Lambda= 0.130080
statistics sampled from 13031 (13041) to 13031 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.401), width: 16
Scan time: 2.800
The best scores are: opt bits E(32554)
CCDS14294.1 FTSJ1 gene_id:24140|Hs108|chrX ( 329) 2264 434.5 5.5e-122
CCDS14295.1 FTSJ1 gene_id:24140|Hs108|chrX ( 327) 2232 428.5 3.5e-120
CCDS75972.1 FTSJ1 gene_id:24140|Hs108|chrX ( 192) 1339 260.8 6.3e-70
CCDS11644.1 FTSJ3 gene_id:117246|Hs108|chr17 ( 847) 539 111.0 3.5e-24
CCDS5328.1 MRM2 gene_id:29960|Hs108|chr7 ( 246) 397 84.1 1.3e-16
>>CCDS14294.1 FTSJ1 gene_id:24140|Hs108|chrX (329 aa)
initn: 2264 init1: 2264 opt: 2264 Z-score: 2303.5 bits: 434.5 E(32554): 5.5e-122
Smith-Waterman score: 2264; 100.0% identity (100.0% similar) in 329 aa overlap (1-329:1-329)
10 20 30 40 50 60
pF1KE1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDPDFNQLDGPTRIIVPFVTCGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDPDFNQLDGPTRIIVPFVTCGD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 LSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRV
250 260 270 280 290 300
310 320
pF1KE1 DTFPQPLAAPQCHTLLAPEMEDNEMSCSP
:::::::::::::::::::::::::::::
CCDS14 DTFPQPLAAPQCHTLLAPEMEDNEMSCSP
310 320
>>CCDS14295.1 FTSJ1 gene_id:24140|Hs108|chrX (327 aa)
initn: 1500 init1: 1475 opt: 2232 Z-score: 2271.1 bits: 428.5 E(32554): 3.5e-120
Smith-Waterman score: 2232; 99.4% identity (99.4% similar) in 329 aa overlap (1-329:1-327)
10 20 30 40 50 60
pF1KE1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDPDFNQLDGPTRIIVPFVTCGD
:::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
CCDS14 KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSY--DFNQLDGPTRIIVPFVTCGD
190 200 210 220 230
250 260 270 280 290 300
pF1KE1 LSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRV
240 250 260 270 280 290
310 320
pF1KE1 DTFPQPLAAPQCHTLLAPEMEDNEMSCSP
:::::::::::::::::::::::::::::
CCDS14 DTFPQPLAAPQCHTLLAPEMEDNEMSCSP
300 310 320
>>CCDS75972.1 FTSJ1 gene_id:24140|Hs108|chrX (192 aa)
initn: 1339 init1: 1339 opt: 1339 Z-score: 1368.9 bits: 260.8 E(32554): 6.3e-70
Smith-Waterman score: 1339; 100.0% identity (100.0% similar) in 191 aa overlap (139-329:2-192)
110 120 130 140 150 160
pF1KE1 PADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYS
::::::::::::::::::::::::::::::
CCDS75 MALNIATHVLKPGGCFVAKIFRGRDVTLLYS
10 20 30
170 180 190 200 210 220
pF1KE1 QLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDPDFNQLDGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDPDFNQLDGP
40 50 60 70 80 90
230 240 250 260 270 280
pF1KE1 TRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAK
100 110 120 130 140 150
290 300 310 320
pF1KE1 EIRPQDCPISRVDTFPQPLAAPQCHTLLAPEMEDNEMSCSP
:::::::::::::::::::::::::::::::::::::::::
CCDS75 EIRPQDCPISRVDTFPQPLAAPQCHTLLAPEMEDNEMSCSP
160 170 180 190
>>CCDS11644.1 FTSJ3 gene_id:117246|Hs108|chr17 (847 aa)
initn: 552 init1: 305 opt: 539 Z-score: 547.7 bits: 111.0 E(32554): 3.5e-24
Smith-Waterman score: 539; 39.0% identity (68.2% similar) in 236 aa overlap (2-237:5-232)
10 20 30 40 50
pF1KE1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQ
:...:..:: .:.::::.:.:.::::::.::...::..: . .:::::::.: :
CCDS11 MGKKGKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 VLSQKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDG
: .. . :. .:.::: . :::.:: .: ::: . . ...: .:.:. ::
CCDS11 VAAKFM--PVSSLIVGVDLVPIKPLPNVVTLQQDITTERCRQALRKELKTWKVDVVLNDG
70 80 90 100 110
120 130 140 150 160 170
pF1KE1 APDVTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSV
::.: . : : ::.: : :: .: : :: :..:.::.:: : .: .: :
CCDS11 APNVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRV
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 LCAKPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDPDFNQLDGPTRIIVPFVT
.::..::. : : :.::::. :. ... ..: .. :.... .. .. .::
CCDS11 QATKPQASRHESAEIFVVCQGFLAPD----KVDSKFFDPKF--AFKEVEVQAKTVTELVT
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE1 CGDLSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPI
CCDS11 KKKPKAEGYAEGDLTLYHRTSVTDFLRAANPVDFLSKASEIMVDDEELAQHPATTEDIRV
240 250 260 270 280 290
>>CCDS5328.1 MRM2 gene_id:29960|Hs108|chr7 (246 aa)
initn: 363 init1: 178 opt: 397 Z-score: 411.8 bits: 84.1 E(32554): 1.3e-16
Smith-Waterman score: 397; 33.5% identity (65.6% similar) in 209 aa overlap (5-206:36-244)
10 20 30
pF1KE1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDK
.. :: . . :: ...: :::::::....
CCDS53 KLVCVSFQRQGFHTVGSRCKNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNE
10 20 30 40 50 60
40 50 60 70 80
pF1KE1 EFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGS------GHVVAVDLQAMAPLPGVVQI
. :... :..: ::::.:::: ::... :. : :..::: . :: :.. .
CCDS53 RHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFL
70 80 90 100 110 120
90 100 110 120 130 140
pF1KE1 -QGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVL
.:.:. :...:.. . : ::... : ::..::..:.:. .: :. :... .:
CCDS53 CPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDIL
130 140 150 160 170 180
150 160 170 180 190 200
pF1KE1 KPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPEGFIP
.::: :. : . : . : .: :..: ::..::. : :.. . : .: .
CCDS53 QPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGRKGTVK
190 200 210 220 230 240
210 220 230 240 250 260
pF1KE1 DLSKPLLDHSYDPDFNQLDGPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPPTQ
CCDS53 Q
329 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 12:48:59 2016 done: Sun Nov 6 12:49:00 2016
Total Scan time: 2.800 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]