Result of FASTA (omim) for
pFN21AE1812
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1812, 328 aa
1>>>pF1KE1812 328 - 328 aa - 328 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5987+/-0.000379; mu= 8.7216+/- 0.023
mean_var=91.3808+/-17.771, 0's: 0 Z-trim(114.4): 56 B-trim: 33 in 1/56
Lambda= 0.134167
statistics sampled from 24209 (24262) to 24209 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.284), width: 16
Scan time: 8.020
The best scores are: opt bits E(85289)
NP_002178 (OMIM: 161561,614890) interleukin-12 sub ( 328) 2240 443.9 2.2e-124
NP_005746 (OMIM: 605816) interleukin-27 subunit be ( 229) 188 46.6 6e-05
XP_011525921 (OMIM: 605816) PREDICTED: interleukin ( 229) 188 46.6 6e-05
XP_016869753 (OMIM: 118946) PREDICTED: ciliary neu ( 372) 186 46.3 0.00012
XP_016869754 (OMIM: 118946) PREDICTED: ciliary neu ( 372) 186 46.3 0.00012
XP_016869752 (OMIM: 118946) PREDICTED: ciliary neu ( 372) 186 46.3 0.00012
NP_001833 (OMIM: 118946) ciliary neurotrophic fact ( 372) 186 46.3 0.00012
NP_001193940 (OMIM: 118946) ciliary neurotrophic f ( 372) 186 46.3 0.00012
NP_671693 (OMIM: 118946) ciliary neurotrophic fact ( 372) 186 46.3 0.00012
XP_016869750 (OMIM: 118946) PREDICTED: ciliary neu ( 439) 186 46.3 0.00014
XP_016869751 (OMIM: 118946) PREDICTED: ciliary neu ( 439) 186 46.3 0.00014
XP_016869749 (OMIM: 118946) PREDICTED: ciliary neu ( 439) 186 46.3 0.00014
NP_001193795 (OMIM: 147880,614689,614752) interleu ( 352) 178 44.7 0.00034
NP_852004 (OMIM: 147880,614689,614752) interleukin ( 365) 178 44.7 0.00035
XP_006711362 (OMIM: 147880,614689,614752) PREDICTE ( 381) 178 44.8 0.00036
NP_000556 (OMIM: 147880,614689,614752) interleukin ( 468) 178 44.8 0.00043
XP_006711361 (OMIM: 147880,614689,614752) PREDICTE ( 484) 178 44.8 0.00044
XP_016856689 (OMIM: 147880,614689,614752) PREDICTE ( 501) 178 44.8 0.00046
XP_016856688 (OMIM: 147880,614689,614752) PREDICTE ( 517) 178 44.8 0.00047
>>NP_002178 (OMIM: 161561,614890) interleukin-12 subunit (328 aa)
initn: 2240 init1: 2240 opt: 2240 Z-score: 2353.9 bits: 443.9 E(85289): 2.2e-124
Smith-Waterman score: 2240; 100.0% identity (100.0% similar) in 328 aa overlap (1-328:1-328)
10 20 30 40 50 60
pF1KE1 MCHQQLVISWFSLVFLASPLVAIWELKKDVYVVELDWYPDAPGEMVVLTCDTPEEDGITW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MCHQQLVISWFSLVFLASPLVAIWELKKDVYVVELDWYPDAPGEMVVLTCDTPEEDGITW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 TLDQSSEVLGSGKTLTIQVKEFGDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TLDQSSEVLGSGKTLTIQVKEFGDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 KEPKNKTFLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KEPKNKTFLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 RGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYENYTSSFFIRDIIKPDPPKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYENYTSSFFIRDIIKPDPPKN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 LQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKTSATVIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKTSATVIC
250 260 270 280 290 300
310 320
pF1KE1 RKNASISVRAQDRYYSSSWSEWASVPCS
::::::::::::::::::::::::::::
NP_002 RKNASISVRAQDRYYSSSWSEWASVPCS
310 320
>>NP_005746 (OMIM: 605816) interleukin-27 subunit beta p (229 aa)
initn: 173 init1: 93 opt: 188 Z-score: 209.8 bits: 46.6 E(85289): 6e-05
Smith-Waterman score: 188; 26.6% identity (55.3% similar) in 188 aa overlap (148-328:42-222)
120 130 140 150 160 170
pF1KE1 KDQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSA
:..: .... . .:..: :. :. .
NP_005 WASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPAPNSTSP--VSFIATYRLG
20 30 40 50 60
180 190 200 210 220 230
pF1KE1 ERVRGDNKEYEYSVECQEDSACPAAEESL----PIEVMVDAVHKLKYENYTSSFFIRDII
.:: . . . ...: .. .: : . : ::: . :. . ::
NP_005 MAARGHS--WPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWGSSSSFVPFITEHII
70 80 90 100 110 120
240 250 260 270 280 290
pF1KE1 KPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQV--QGKSKREKKDRVF-
:::::....:.:: . ::..:.:: : .: :. ::: . .. :: .. .. .
NP_005 KPDPPEGVRLSPLAE-RQLQVQWEPPGSWPFPE-IFSLKYWIRYKRQGAARFHRVGPIEA
130 140 150 160 170 180
300 310 320
pF1KE1 TDKTSATVICRKNASISVRAQDRYYSSSWSEWASVPCS
:. .: : ..: ::: . :.: :.: .
NP_005 TSFILRAVRPRARYYVQVAAQDLTDYGELSDW-SLPATATMSLGK
190 200 210 220
>>XP_011525921 (OMIM: 605816) PREDICTED: interleukin-27 (229 aa)
initn: 173 init1: 93 opt: 188 Z-score: 209.8 bits: 46.6 E(85289): 6e-05
Smith-Waterman score: 188; 26.6% identity (55.3% similar) in 188 aa overlap (148-328:42-222)
120 130 140 150 160 170
pF1KE1 KDQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSA
:..: .... . .:..: :. :. .
XP_011 WASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPAPNSTSP--VSFIATYRLG
20 30 40 50 60
180 190 200 210 220 230
pF1KE1 ERVRGDNKEYEYSVECQEDSACPAAEESL----PIEVMVDAVHKLKYENYTSSFFIRDII
.:: . . . ...: .. .: : . : ::: . :. . ::
XP_011 MAARGHS--WPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWGSSSSFVPFITEHII
70 80 90 100 110 120
240 250 260 270 280 290
pF1KE1 KPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQV--QGKSKREKKDRVF-
:::::....:.:: . ::..:.:: : .: :. ::: . .. :: .. .. .
XP_011 KPDPPEGVRLSPLAE-RQLQVQWEPPGSWPFPE-IFSLKYWIRYKRQGAARFHRVGPIEA
130 140 150 160 170 180
300 310 320
pF1KE1 TDKTSATVICRKNASISVRAQDRYYSSSWSEWASVPCS
:. .: : ..: ::: . :.: :.: .
XP_011 TSFILRAVRPRARYYVQVAAQDLTDYGELSDW-SLPATATMSLGK
190 200 210 220
>>XP_016869753 (OMIM: 118946) PREDICTED: ciliary neurotr (372 aa)
initn: 138 init1: 75 opt: 186 Z-score: 204.4 bits: 46.3 E(85289): 0.00012
Smith-Waterman score: 253; 23.9% identity (51.2% similar) in 326 aa overlap (8-323:5-294)
10 20 30 40 50
pF1KE1 MCHQQLVISWFSLVFLASPLVAIWELKKDVYVVELDWYPDAPGEMVVLTCDTPEEDG-IT
. : . ::. .... ... . : . : :.: : : . :. .:
XP_016 MAAPVPWACCAVLAAAAAVVYAQRHSPQEAPHVQY-ERLGSDVTLPCGTANWDAAVT
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 WTLDQSSEV--LGSGKTLTIQVKEFGDAGQYTC-HKGGEVLSHSLLLLHKKEDGIWSTDI
: .. .. . : .:. :... :.: .: :.: :. . : :..:: : :.
XP_016 WRVNGTDLAPDLLNGSQLVLHGLELGHSGLYACFHRDSWHLRHQVLL-HV---GL-----
60 70 80 90 100
120 130 140 150 160 170
pF1KE1 LKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDL--TFSVKSSRGSSDPQGVTCGAAT
: . : :....: : : : : . ::.: .:: . ..:
XP_016 ------PPREPVLSCRSNTYPKGFYCSWHLPTPTYIPNTFNVTVLHGS---KIMVC----
110 120 130 140 150
180 190 200 210 220 230
pF1KE1 LSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYENYTSSFFIRDIIK
.:. . .:. .. .: ... . : .. . .: :.:
XP_016 ---------EKDPALKNRCHIRYM--HLFSTIKYKVSISVSNALGHNATAITFDEFTIVK
160 170 180 190 200
240 250 260 270 280 290
pF1KE1 PDPPKNLQLKPL-KNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDK
::::.:. .:. .: :..::.:. :.:: :.: : : : .. . . . ..:
XP_016 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPES-FPLKFFLRYRPLILDQWQHVELSDG
210 220 230 240 250 260
300 310 320
pF1KE1 TSATVI---CRKNASISVRAQDRYYSSSWSEWASVPCS
:. :. :. :.: :.: .. ::.:.
XP_016 TAHTITDAYAGKEYIIQVAAKDNEIGT-WSDWSVAAHATPWTEEPRHLTTEAQAAETTTS
270 280 290 300 310 320
XP_016 TTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATASSLLI
330 340 350 360 370
>>XP_016869754 (OMIM: 118946) PREDICTED: ciliary neurotr (372 aa)
initn: 138 init1: 75 opt: 186 Z-score: 204.4 bits: 46.3 E(85289): 0.00012
Smith-Waterman score: 253; 23.9% identity (51.2% similar) in 326 aa overlap (8-323:5-294)
10 20 30 40 50
pF1KE1 MCHQQLVISWFSLVFLASPLVAIWELKKDVYVVELDWYPDAPGEMVVLTCDTPEEDG-IT
. : . ::. .... ... . : . : :.: : : . :. .:
XP_016 MAAPVPWACCAVLAAAAAVVYAQRHSPQEAPHVQY-ERLGSDVTLPCGTANWDAAVT
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 WTLDQSSEV--LGSGKTLTIQVKEFGDAGQYTC-HKGGEVLSHSLLLLHKKEDGIWSTDI
: .. .. . : .:. :... :.: .: :.: :. . : :..:: : :.
XP_016 WRVNGTDLAPDLLNGSQLVLHGLELGHSGLYACFHRDSWHLRHQVLL-HV---GL-----
60 70 80 90 100
120 130 140 150 160 170
pF1KE1 LKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDL--TFSVKSSRGSSDPQGVTCGAAT
: . : :....: : : : : . ::.: .:: . ..:
XP_016 ------PPREPVLSCRSNTYPKGFYCSWHLPTPTYIPNTFNVTVLHGS---KIMVC----
110 120 130 140 150
180 190 200 210 220 230
pF1KE1 LSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYENYTSSFFIRDIIK
.:. . .:. .. .: ... . : .. . .: :.:
XP_016 ---------EKDPALKNRCHIRYM--HLFSTIKYKVSISVSNALGHNATAITFDEFTIVK
160 170 180 190 200
240 250 260 270 280 290
pF1KE1 PDPPKNLQLKPL-KNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDK
::::.:. .:. .: :..::.:. :.:: :.: : : : .. . . . ..:
XP_016 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPES-FPLKFFLRYRPLILDQWQHVELSDG
210 220 230 240 250 260
300 310 320
pF1KE1 TSATVI---CRKNASISVRAQDRYYSSSWSEWASVPCS
:. :. :. :.: :.: .. ::.:.
XP_016 TAHTITDAYAGKEYIIQVAAKDNEIGT-WSDWSVAAHATPWTEEPRHLTTEAQAAETTTS
270 280 290 300 310 320
XP_016 TTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATASSLLI
330 340 350 360 370
>>XP_016869752 (OMIM: 118946) PREDICTED: ciliary neurotr (372 aa)
initn: 138 init1: 75 opt: 186 Z-score: 204.4 bits: 46.3 E(85289): 0.00012
Smith-Waterman score: 253; 23.9% identity (51.2% similar) in 326 aa overlap (8-323:5-294)
10 20 30 40 50
pF1KE1 MCHQQLVISWFSLVFLASPLVAIWELKKDVYVVELDWYPDAPGEMVVLTCDTPEEDG-IT
. : . ::. .... ... . : . : :.: : : . :. .:
XP_016 MAAPVPWACCAVLAAAAAVVYAQRHSPQEAPHVQY-ERLGSDVTLPCGTANWDAAVT
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 WTLDQSSEV--LGSGKTLTIQVKEFGDAGQYTC-HKGGEVLSHSLLLLHKKEDGIWSTDI
: .. .. . : .:. :... :.: .: :.: :. . : :..:: : :.
XP_016 WRVNGTDLAPDLLNGSQLVLHGLELGHSGLYACFHRDSWHLRHQVLL-HV---GL-----
60 70 80 90 100
120 130 140 150 160 170
pF1KE1 LKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDL--TFSVKSSRGSSDPQGVTCGAAT
: . : :....: : : : : . ::.: .:: . ..:
XP_016 ------PPREPVLSCRSNTYPKGFYCSWHLPTPTYIPNTFNVTVLHGS---KIMVC----
110 120 130 140 150
180 190 200 210 220 230
pF1KE1 LSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYENYTSSFFIRDIIK
.:. . .:. .. .: ... . : .. . .: :.:
XP_016 ---------EKDPALKNRCHIRYM--HLFSTIKYKVSISVSNALGHNATAITFDEFTIVK
160 170 180 190 200
240 250 260 270 280 290
pF1KE1 PDPPKNLQLKPL-KNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDK
::::.:. .:. .: :..::.:. :.:: :.: : : : .. . . . ..:
XP_016 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPES-FPLKFFLRYRPLILDQWQHVELSDG
210 220 230 240 250 260
300 310 320
pF1KE1 TSATVI---CRKNASISVRAQDRYYSSSWSEWASVPCS
:. :. :. :.: :.: .. ::.:.
XP_016 TAHTITDAYAGKEYIIQVAAKDNEIGT-WSDWSVAAHATPWTEEPRHLTTEAQAAETTTS
270 280 290 300 310 320
XP_016 TTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATASSLLI
330 340 350 360 370
>>NP_001833 (OMIM: 118946) ciliary neurotrophic factor r (372 aa)
initn: 138 init1: 75 opt: 186 Z-score: 204.4 bits: 46.3 E(85289): 0.00012
Smith-Waterman score: 253; 23.9% identity (51.2% similar) in 326 aa overlap (8-323:5-294)
10 20 30 40 50
pF1KE1 MCHQQLVISWFSLVFLASPLVAIWELKKDVYVVELDWYPDAPGEMVVLTCDTPEEDG-IT
. : . ::. .... ... . : . : :.: : : . :. .:
NP_001 MAAPVPWACCAVLAAAAAVVYAQRHSPQEAPHVQY-ERLGSDVTLPCGTANWDAAVT
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 WTLDQSSEV--LGSGKTLTIQVKEFGDAGQYTC-HKGGEVLSHSLLLLHKKEDGIWSTDI
: .. .. . : .:. :... :.: .: :.: :. . : :..:: : :.
NP_001 WRVNGTDLAPDLLNGSQLVLHGLELGHSGLYACFHRDSWHLRHQVLL-HV---GL-----
60 70 80 90 100
120 130 140 150 160 170
pF1KE1 LKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDL--TFSVKSSRGSSDPQGVTCGAAT
: . : :....: : : : : . ::.: .:: . ..:
NP_001 ------PPREPVLSCRSNTYPKGFYCSWHLPTPTYIPNTFNVTVLHGS---KIMVC----
110 120 130 140 150
180 190 200 210 220 230
pF1KE1 LSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYENYTSSFFIRDIIK
.:. . .:. .. .: ... . : .. . .: :.:
NP_001 ---------EKDPALKNRCHIRYM--HLFSTIKYKVSISVSNALGHNATAITFDEFTIVK
160 170 180 190 200
240 250 260 270 280 290
pF1KE1 PDPPKNLQLKPL-KNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDK
::::.:. .:. .: :..::.:. :.:: :.: : : : .. . . . ..:
NP_001 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPES-FPLKFFLRYRPLILDQWQHVELSDG
210 220 230 240 250 260
300 310 320
pF1KE1 TSATVI---CRKNASISVRAQDRYYSSSWSEWASVPCS
:. :. :. :.: :.: .. ::.:.
NP_001 TAHTITDAYAGKEYIIQVAAKDNEIGT-WSDWSVAAHATPWTEEPRHLTTEAQAAETTTS
270 280 290 300 310 320
NP_001 TTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATASSLLI
330 340 350 360 370
>>NP_001193940 (OMIM: 118946) ciliary neurotrophic facto (372 aa)
initn: 138 init1: 75 opt: 186 Z-score: 204.4 bits: 46.3 E(85289): 0.00012
Smith-Waterman score: 253; 23.9% identity (51.2% similar) in 326 aa overlap (8-323:5-294)
10 20 30 40 50
pF1KE1 MCHQQLVISWFSLVFLASPLVAIWELKKDVYVVELDWYPDAPGEMVVLTCDTPEEDG-IT
. : . ::. .... ... . : . : :.: : : . :. .:
NP_001 MAAPVPWACCAVLAAAAAVVYAQRHSPQEAPHVQY-ERLGSDVTLPCGTANWDAAVT
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 WTLDQSSEV--LGSGKTLTIQVKEFGDAGQYTC-HKGGEVLSHSLLLLHKKEDGIWSTDI
: .. .. . : .:. :... :.: .: :.: :. . : :..:: : :.
NP_001 WRVNGTDLAPDLLNGSQLVLHGLELGHSGLYACFHRDSWHLRHQVLL-HV---GL-----
60 70 80 90 100
120 130 140 150 160 170
pF1KE1 LKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDL--TFSVKSSRGSSDPQGVTCGAAT
: . : :....: : : : : . ::.: .:: . ..:
NP_001 ------PPREPVLSCRSNTYPKGFYCSWHLPTPTYIPNTFNVTVLHGS---KIMVC----
110 120 130 140 150
180 190 200 210 220 230
pF1KE1 LSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYENYTSSFFIRDIIK
.:. . .:. .. .: ... . : .. . .: :.:
NP_001 ---------EKDPALKNRCHIRYM--HLFSTIKYKVSISVSNALGHNATAITFDEFTIVK
160 170 180 190 200
240 250 260 270 280 290
pF1KE1 PDPPKNLQLKPL-KNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDK
::::.:. .:. .: :..::.:. :.:: :.: : : : .. . . . ..:
NP_001 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPES-FPLKFFLRYRPLILDQWQHVELSDG
210 220 230 240 250 260
300 310 320
pF1KE1 TSATVI---CRKNASISVRAQDRYYSSSWSEWASVPCS
:. :. :. :.: :.: .. ::.:.
NP_001 TAHTITDAYAGKEYIIQVAAKDNEIGT-WSDWSVAAHATPWTEEPRHLTTEAQAAETTTS
270 280 290 300 310 320
NP_001 TTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATASSLLI
330 340 350 360 370
>>NP_671693 (OMIM: 118946) ciliary neurotrophic factor r (372 aa)
initn: 138 init1: 75 opt: 186 Z-score: 204.4 bits: 46.3 E(85289): 0.00012
Smith-Waterman score: 253; 23.9% identity (51.2% similar) in 326 aa overlap (8-323:5-294)
10 20 30 40 50
pF1KE1 MCHQQLVISWFSLVFLASPLVAIWELKKDVYVVELDWYPDAPGEMVVLTCDTPEEDG-IT
. : . ::. .... ... . : . : :.: : : . :. .:
NP_671 MAAPVPWACCAVLAAAAAVVYAQRHSPQEAPHVQY-ERLGSDVTLPCGTANWDAAVT
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 WTLDQSSEV--LGSGKTLTIQVKEFGDAGQYTC-HKGGEVLSHSLLLLHKKEDGIWSTDI
: .. .. . : .:. :... :.: .: :.: :. . : :..:: : :.
NP_671 WRVNGTDLAPDLLNGSQLVLHGLELGHSGLYACFHRDSWHLRHQVLL-HV---GL-----
60 70 80 90 100
120 130 140 150 160 170
pF1KE1 LKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDL--TFSVKSSRGSSDPQGVTCGAAT
: . : :....: : : : : . ::.: .:: . ..:
NP_671 ------PPREPVLSCRSNTYPKGFYCSWHLPTPTYIPNTFNVTVLHGS---KIMVC----
110 120 130 140 150
180 190 200 210 220 230
pF1KE1 LSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYENYTSSFFIRDIIK
.:. . .:. .. .: ... . : .. . .: :.:
NP_671 ---------EKDPALKNRCHIRYM--HLFSTIKYKVSISVSNALGHNATAITFDEFTIVK
160 170 180 190 200
240 250 260 270 280 290
pF1KE1 PDPPKNLQLKPL-KNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDK
::::.:. .:. .: :..::.:. :.:: :.: : : : .. . . . ..:
NP_671 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPES-FPLKFFLRYRPLILDQWQHVELSDG
210 220 230 240 250 260
300 310 320
pF1KE1 TSATVI---CRKNASISVRAQDRYYSSSWSEWASVPCS
:. :. :. :.: :.: .. ::.:.
NP_671 TAHTITDAYAGKEYIIQVAAKDNEIGT-WSDWSVAAHATPWTEEPRHLTTEAQAAETTTS
270 280 290 300 310 320
NP_671 TTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATASSLLI
330 340 350 360 370
>>XP_016869750 (OMIM: 118946) PREDICTED: ciliary neurotr (439 aa)
initn: 138 init1: 75 opt: 186 Z-score: 203.3 bits: 46.3 E(85289): 0.00014
Smith-Waterman score: 253; 23.9% identity (51.2% similar) in 326 aa overlap (8-323:72-361)
10 20 30
pF1KE1 MCHQQLVISWFSLVFLASPLVAIWELKKDVYVVELDW
. : . ::. .... ... .
XP_016 RLRVYSSSDGGGAAGSKDTLGLSSSVMAAPVPWACCAVLAAAAAVVYAQRHSPQEAPHVQ
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE1 YPDAPGEMVVLTCDTPEEDG-ITWTLDQSSEV--LGSGKTLTIQVKEFGDAGQYTC-HKG
: . : :.: : : . :. .:: .. .. . : .:. :... :.: .: :.: :.
XP_016 Y-ERLGSDVTLPCGTANWDAAVTWRVNGTDLAPDLLNGSQLVLHGLELGHSGLYACFHRD
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE1 GEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDL-
. : :..:: : :. : . : :....: : : : : .
XP_016 SWHLRHQVLL-HV---GL-----------PPREPVLSCRSNTYPKGFYCSWHLPTPTYIP
170 180 190 200
160 170 180 190 200 210
pF1KE1 -TFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVM
::.: .:: . ..: .:. . .:. .. .:
XP_016 NTFNVTVLHGS---KIMVC-------------EKDPALKNRCHIRYM--HLFSTIKYKVS
210 220 230 240
220 230 240 250 260 270
pF1KE1 VDAVHKLKYENYTSSFFIRDIIKPDPPKNLQLKPL-KNSRQVEVSWEYPDTWSTPHSYFS
... . : .. . .: :.:::::.:. .:. .: :..::.:. :.:: :.: :
XP_016 ISVSNALGHNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPES-FP
250 260 270 280 290 300
280 290 300 310 320
pF1KE1 LTFCVQVQGKSKREKKDRVFTDKTSATVI---CRKNASISVRAQDRYYSSSWSEWASVPC
: : .. . . . ..: :. :. :. :.: :.: .. ::.:.
XP_016 LKFFLRYRPLILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKDNEIGT-WSDWSVAAH
310 320 330 340 350 360
pF1KE1 S
XP_016 ATPWTEEPRHLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITL
370 380 390 400 410 420
328 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 17:04:03 2016 done: Sun Nov 6 17:04:04 2016
Total Scan time: 8.020 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]