FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1812, 328 aa
  1>>>pF1KE1812 328 - 328 aa - 328 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5161+/-0.000844; mu= 9.3396+/- 0.050
 mean_var=81.3677+/-15.874, 0's: 0 Z-trim(107.3): 34  B-trim: 2 in 1/52
 Lambda= 0.142183
 statistics sampled from 9469 (9492) to 9469 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.292), width:  16
 Scan time:  2.660

The best scores are:                                      opt bits E(32554)
CCDS4346.1 IL12B gene_id:3593|Hs108|chr5           ( 328) 2240 469.2 2.1e-132


>>CCDS4346.1 IL12B gene_id:3593|Hs108|chr5                (328 aa)
 initn: 2240 init1: 2240 opt: 2240  Z-score: 2490.7  bits: 469.2 E(32554): 2.1e-132
Smith-Waterman score: 2240; 100.0% identity (100.0% similar) in 328 aa overlap (1-328:1-328)

               10        20        30        40        50        60
pF1KE1 MCHQQLVISWFSLVFLASPLVAIWELKKDVYVVELDWYPDAPGEMVVLTCDTPEEDGITW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MCHQQLVISWFSLVFLASPLVAIWELKKDVYVVELDWYPDAPGEMVVLTCDTPEEDGITW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 TLDQSSEVLGSGKTLTIQVKEFGDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TLDQSSEVLGSGKTLTIQVKEFGDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 KEPKNKTFLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KEPKNKTFLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 RGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYENYTSSFFIRDIIKPDPPKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYENYTSSFFIRDIIKPDPPKN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 LQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKTSATVIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKTSATVIC
              250       260       270       280       290       300

              310       320        
pF1KE1 RKNASISVRAQDRYYSSSWSEWASVPCS
       ::::::::::::::::::::::::::::
CCDS43 RKNASISVRAQDRYYSSSWSEWASVPCS
              310       320        




328 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:04:02 2016 done: Sun Nov  6 17:04:02 2016
 Total Scan time:  2.660 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]