FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1809, 325 aa
  1>>>pF1KE1809 325 - 325 aa - 325 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2124+/-0.000897; mu= 15.9158+/- 0.053
 mean_var=58.7633+/-11.461, 0's: 0 Z-trim(105.1): 17  B-trim: 4 in 1/46
 Lambda= 0.167310
 statistics sampled from 8236 (8242) to 8236 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.641), E-opt: 0.2 (0.253), width:  16
 Scan time:  1.920

The best scores are:                                      opt bits E(32554)
CCDS12265.1 ACP5 gene_id:54|Hs108|chr19            ( 325) 2201 539.7 1.2e-153


>>CCDS12265.1 ACP5 gene_id:54|Hs108|chr19                 (325 aa)
 initn: 2201 init1: 2201 opt: 2201  Z-score: 2871.8  bits: 539.7 E(32554): 1.2e-153
Smith-Waterman score: 2201; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325)

               10        20        30        40        50        60
pF1KE1 MDMWTALLILQALLLPSLADGATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDMWTALLILQALLLPSLADGATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 IAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 ARTQLSWLKKQLAAAREDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ARTQLSWLKKQLAAAREDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 DHNLQYLQDENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DHNLQYLQDENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSK
              250       260       270       280       290       300

              310       320     
pF1KE1 EMTVTYIEASGKSLFKTRLPRRARP
       :::::::::::::::::::::::::
CCDS12 EMTVTYIEASGKSLFKTRLPRRARP
              310       320     




325 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 00:57:36 2016 done: Tue Nov  8 00:57:36 2016
 Total Scan time:  1.920 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]