FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1804, 318 aa
  1>>>pF1KE1804 318 - 318 aa - 318 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2595+/-0.00076; mu= 16.0174+/- 0.046
 mean_var=61.5803+/-11.979, 0's: 0 Z-trim(107.6): 13  B-trim: 7 in 1/48
 Lambda= 0.163438
 statistics sampled from 9693 (9696) to 9693 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.298), width:  16
 Scan time:  2.110

The best scores are:                                      opt bits E(32554)
CCDS3416.1 BST1 gene_id:683|Hs108|chr4             ( 318) 2163 518.3 3.1e-147
CCDS3417.1 CD38 gene_id:952|Hs108|chr4             ( 300)  659 163.7 1.7e-40


>>CCDS3416.1 BST1 gene_id:683|Hs108|chr4                  (318 aa)
 initn: 2163 init1: 2163 opt: 2163  Z-score: 2756.8  bits: 518.3 E(32554): 3.1e-147
Smith-Waterman score: 2163; 100.0% identity (100.0% similar) in 318 aa overlap (1-318:1-318)

               10        20        30        40        50        60
pF1KE1 MAAQGCAASRLLQLLLQLLLLLLLLAAGGARARWRGEGTSAHLRDIFLGRCAEYRALLSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MAAQGCAASRLLQLLLQLLLLLLLLAAGGARARWRGEGTSAHLRDIFLGRCAEYRALLSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EQRNKNCTAIWEAFKVALDKDPCSVLPSDYDLFINLSRHSIPRDKSLFWENSHLLVNSFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EQRNKNCTAIWEAFKVALDKDPCSVLPSDYDLFINLSRHSIPRDKSLFWENSHLLVNSFA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 DNTRRFMPLSDVLYGRVADFLSWCRQKNDSGLDYQSCPTSEDCENNPVDSFWKRASIQYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DNTRRFMPLSDVLYGRVADFLSWCRQKNDSGLDYQSCPTSEDCENNPVDSFWKRASIQYS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 KDSSGVIHVMLNGSEPTGAYPIKGFFADYEIPNLQKEKITRIEIWVMHEIGGPNVESCGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KDSSGVIHVMLNGSEPTGAYPIKGFFADYEIPNLQKEKITRIEIWVMHEIGGPNVESCGE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 GSMKVLEKRLKDMGFQYSCINDYRPVKLLQCVDHSTHPDCALKSAAAATQRKAPSLYTEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GSMKVLEKRLKDMGFQYSCINDYRPVKLLQCVDHSTHPDCALKSAAAATQRKAPSLYTEQ
              250       260       270       280       290       300

              310        
pF1KE1 RAGLIIPLFLVLASRTQL
       ::::::::::::::::::
CCDS34 RAGLIIPLFLVLASRTQL
              310        

>>CCDS3417.1 CD38 gene_id:952|Hs108|chr4                  (300 aa)
 initn: 569 init1: 382 opt: 659  Z-score: 840.6  bits: 163.7 E(32554): 1.7e-40
Smith-Waterman score: 659; 36.8% identity (66.0% similar) in 285 aa overlap (6-280:16-296)

                         10        20        30              40    
pF1KE1           MAAQGCAASRLLQLLLQLLLLLLLLAAGGA------RARWRGEGTSAHLR
                      :  ::  :: : . .:.:.:..  :      : .: : ::. .. 
CCDS34 MANCEFSPVSGDKPCCRLSRRAQLCLGVSILVLILVVVLAVVVPRWRQQWSGPGTTKRFP
               10        20        30        40        50        60

           50        60        70         80        90       100   
pF1KE1 DIFLGRCAEYRALLSPEQRNKNCTAIWEAFKVA-LDKDPCSVLPSDYDLFINLSRHSIPR
       .  :.::..:  .  ::.:. .: ..:.::: : ..: ::..   ::. ...:. ...: 
CCDS34 ETVLARCVKYTEI-HPEMRHVDCQSVWDAFKGAFISKHPCNITEEDYQPLMKLGTQTVPC
               70         80        90       100       110         

           110       120       130       140       150        160  
pF1KE1 DKSLFWENSHLLVNSFADNTRRFMPLSDVLYGRVADFLSWCRQKNDSGLDYQSCPT-SED
       .: :.:   . :...:..  : .. : :.: : .:: :.:: . : : ..:::::   .:
CCDS34 NKILLWSRIKDLAHQFTQVQRDMFTLEDTLLGYLADDLTWCGEFNTSKINYQSCPDWRKD
     120       130       140       150       160       170         

            170       180       190       200       210       220  
pF1KE1 CENNPVDSFWKRASIQYSKDSSGVIHVMLNGSEPTGAYPIKGFFADYEIPNLQKEKITRI
       : ::::. ::: .: .... .  :.:::::::. .  .  .. :.. :. ::: ::.  .
CCDS34 CSNNPVSVFWKTVSRRFAEAACDVVHVMLNGSR-SKIFDKNSTFGSVEVHNLQPEKVQTL
     180       190       200       210        220       230        

            230         240       250       260       270       280
pF1KE1 EIWVMHEIGG--PNVESCGEGSMKVLEKRLKDMGFQYSCINDYRPVKLLQCVDHSTHPDC
       : ::.:  ::   . . : . ..: ::. ..  ..:.:: : ::: :.:::: .    .:
CCDS34 EAWVIH--GGREDSRDLCQDPTIKELESIISKRNIQFSCKNIYRPDKFLQCVKNPEDSSC
      240         250       260       270       280       290      

              290       300       310        
pF1KE1 ALKSAAAATQRKAPSLYTEQRAGLIIPLFLVLASRTQL
                                             
CCDS34 TSEI                                  
        300                                  




318 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:32:40 2016 done: Sun Nov  6 17:32:40 2016
 Total Scan time:  2.110 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]