Result of FASTA (ccds) for
pFN21AE1795
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1795, 313 aa
1>>>pF1KE1795 313 - 313 aa - 313 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0681+/-0.000832; mu= 11.5602+/- 0.050
mean_var=69.6918+/-14.066, 0's: 0 Z-trim(106.7): 30 B-trim: 0 in 0/51
Lambda= 0.153633
statistics sampled from 9123 (9146) to 9123 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.281), width: 16
Scan time: 2.550
The best scores are: opt bits E(32554)
CCDS2279.1 PRKRA gene_id:8575|Hs108|chr2 ( 313) 2078 469.5 1.4e-132
CCDS46460.1 PRKRA gene_id:8575|Hs108|chr2 ( 302) 1940 438.9 2.3e-123
CCDS46461.1 PRKRA gene_id:8575|Hs108|chr2 ( 288) 1912 432.7 1.6e-121
CCDS41791.1 TARBP2 gene_id:6895|Hs108|chr12 ( 345) 329 81.9 7.9e-16
CCDS8861.1 TARBP2 gene_id:6895|Hs108|chr12 ( 366) 329 81.9 8.3e-16
CCDS55244.1 STAU2 gene_id:27067|Hs108|chr8 ( 398) 254 65.3 9.1e-11
>>CCDS2279.1 PRKRA gene_id:8575|Hs108|chr2 (313 aa)
initn: 2078 init1: 2078 opt: 2078 Z-score: 2493.5 bits: 469.5 E(32554): 1.4e-132
Smith-Waterman score: 2078; 100.0% identity (100.0% similar) in 313 aa overlap (1-313:1-313)
10 20 30 40 50 60
pF1KE1 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 PKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 PKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 KRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 KRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH
250 260 270 280 290 300
310
pF1KE1 NALQYLKIIAERK
:::::::::::::
CCDS22 NALQYLKIIAERK
310
>>CCDS46460.1 PRKRA gene_id:8575|Hs108|chr2 (302 aa)
initn: 1940 init1: 1940 opt: 1940 Z-score: 2328.4 bits: 438.9 E(32554): 2.3e-123
Smith-Waterman score: 1940; 99.3% identity (99.3% similar) in 295 aa overlap (19-313:8-302)
10 20 30 40 50 60
pF1KE1 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ
: :::::::::::::::::::::::::::::::::::::::
CCDS46 MQSTPFCGFCSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ
10 20 30 40
70 80 90 100 110 120
pF1KE1 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE1 PKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQA
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE1 KRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTD
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE1 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH
230 240 250 260 270 280
310
pF1KE1 NALQYLKIIAERK
:::::::::::::
CCDS46 NALQYLKIIAERK
290 300
>>CCDS46461.1 PRKRA gene_id:8575|Hs108|chr2 (288 aa)
initn: 1912 init1: 1912 opt: 1912 Z-score: 2295.2 bits: 432.7 E(32554): 1.6e-121
Smith-Waterman score: 1912; 100.0% identity (100.0% similar) in 288 aa overlap (26-313:1-288)
10 20 30 40 50 60
pF1KE1 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ
:::::::::::::::::::::::::::::::::::
CCDS46 MITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ
10 20 30
70 80 90 100 110 120
pF1KE1 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE1 PKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQA
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE1 KRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTD
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE1 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH
220 230 240 250 260 270
310
pF1KE1 NALQYLKIIAERK
:::::::::::::
CCDS46 NALQYLKIIAERK
280
>>CCDS41791.1 TARBP2 gene_id:6895|Hs108|chr12 (345 aa)
initn: 925 init1: 320 opt: 329 Z-score: 397.7 bits: 81.9 E(32554): 7.9e-16
Smith-Waterman score: 839; 44.6% identity (67.8% similar) in 345 aa overlap (26-313:1-345)
10 20 30 40 50 60
pF1KE1 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ
:..:.::::::..:.::: . . :::. ... :
CCDS41 MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQ
10 20 30
70 80 90 100 110
pF1KE1 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPD-----PL--
: :.::::::::: .:::.: ::: :::.:::.:.. ::... . :. : ::
CCDS41 AHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDS
40 50 60 70 80 90
120 130 140
pF1KE1 -MPD--------------PS----KQPKNQL-----------NPIGSLQELAIHHGWRLP
.:. :: ..: .: ::.:.::::....:::::
CCDS41 SLPEDIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLP
100 110 120 130 140 150
150 160 170 180 190
pF1KE1 EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKF----------S
:::..::.::::..:.: ::.: :.: :.:.::: :::::: :.: . .
CCDS41 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGN
160 170 180 190 200 210
200 210 220 230 240
pF1KE1 NISPEN-HIS------LTNVVGHSLGCTWHSLRNSPGEKINLLKR-SLLSIPNTDYI--Q
.. :.. :.: : .. ... :::: ::::: :::: :. :: :. .
CCDS41 EVEPDDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCR
220 230 240 250 260 270
250 260 270 280 290 300
pF1KE1 LLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNAL
.:::...::.:...::::.::: .: :::.::::.: ::::::. . :...::. ::
CCDS41 VLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRAL
280 290 300 310 320 330
310
pF1KE1 QYLKIIAERK
:::::.: :
CCDS41 QYLKIMAGSK
340
>>CCDS8861.1 TARBP2 gene_id:6895|Hs108|chr12 (366 aa)
initn: 931 init1: 320 opt: 329 Z-score: 397.2 bits: 81.9 E(32554): 8.3e-16
Smith-Waterman score: 848; 44.6% identity (66.7% similar) in 354 aa overlap (19-313:15-366)
10 20 30 40 50 60
pF1KE1 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ
: :. .:..:.::::::..:.::: . . :::. ... :
CCDS88 MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQ
10 20 30 40 50
70 80 90 100 110
pF1KE1 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPD-----PL--
: :.::::::::: .:::.: ::: :::.:::.:.. ::... . :. : ::
CCDS88 AHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDS
60 70 80 90 100 110
120 130 140
pF1KE1 -MPD--------------PS----KQPKNQL-----------NPIGSLQELAIHHGWRLP
.:. :: ..: .: ::.:.::::....:::::
CCDS88 SLPEDIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLP
120 130 140 150 160 170
150 160 170 180 190
pF1KE1 EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKF----------S
:::..::.::::..:.: ::.: :.: :.:.::: :::::: :.: . .
CCDS88 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGN
180 190 200 210 220 230
200 210 220 230 240
pF1KE1 NISPEN-HISLTNVVGHSL--------GCTWHSLRNSPGEKINLLKR-SLLSIPNTDYI-
.. :.. :.:. :: : :::: ::::: :::: :. :: :.
CCDS88 EVEPDDDHFSIG--VGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPAC
240 250 260 270 280 290
250 260 270 280 290 300
pF1KE1 -QLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN
..:::...::.:...::::.::: .: :::.::::.: ::::::. . :...::.
CCDS88 CRVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARR
300 310 320 330 340 350
310
pF1KE1 ALQYLKIIAERK
:::::::.: :
CCDS88 ALQYLKIMAGSK
360
>>CCDS55244.1 STAU2 gene_id:27067|Hs108|chr8 (398 aa)
initn: 247 init1: 138 opt: 254 Z-score: 306.8 bits: 65.3 E(32554): 9.1e-11
Smith-Waterman score: 278; 26.7% identity (58.5% similar) in 270 aa overlap (33-283:34-292)
10 20 30 40 50 60
pF1KE1 QSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPV-YECERSDVQI
:. :... : ..: .:.:: .: . .
CCDS55 LQALQNEPIPERSPQNGESGKDVDDDKDANKSEISLVFEIALK-RNMPVSFEVIKESGPP
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 HVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPS---
:. .:. ::.::... :::.::::.:.::: .... :: : :.. :.
CCDS55 HMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLP------PLPVVEKPKLFF
70 80 90 100 110
120 130 140 150 160
pF1KE1 -KQPKN----------QLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLES
:.::. .:::. : .. . . :.:.: .: : ..::.. .. .
CCDS55 KKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKVGN
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE1 FMETGKGASKKQAKRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKIN
. :: : .:: ::.:::: .: ... . : . . .:.. : : . . . : :
CCDS55 EVATGTGPNKKIAKKNAAEAMLLQLGYKASTNLQDQLEKTGENKG--WSGPKPGFPEPTN
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE1 LLKRSLLSIPNTDYIQLLSEIAKEQ---GFNITYLDIDELSA-NGQYQCLAELSTSPITV
...: . . : : . : .... : .. ::. ... .... .. :.: :.
CCDS55 NTPKGILHL-SPDVYQEM-EASRHKVISGTTLGYLSPKDMNQPSSSFFSISPTSNSSATI
240 250 260 270 280 290
290 300 310
pF1KE1 CHGSGISCGNAQSDAAHNALQYLKIIAERK
CCDS55 ARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLEYLARIQGFQAALSALKQFSEQGL
300 310 320 330 340 350
313 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 18:11:15 2016 done: Sun Nov 6 18:11:16 2016
Total Scan time: 2.550 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]