Result of FASTA (omim) for
pFN21AE1791
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1791, 303 aa
1>>>pF1KE1791 303 - 303 aa - 303 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5229+/-0.000272; mu= 16.5623+/- 0.017
mean_var=88.7767+/-18.365, 0's: 0 Z-trim(120.3): 44 B-trim: 1797 in 1/54
Lambda= 0.136121
statistics sampled from 35270 (35321) to 35270 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.414), width: 16
Scan time: 8.670
The best scores are: opt bits E(85289)
NP_038467 (OMIM: 605341) paired immunoglobulin-lik ( 303) 2018 405.4 7e-113
NP_839956 (OMIM: 605342) paired immunoglobulin-lik ( 227) 1215 247.6 1.7e-65
NP_840057 (OMIM: 605341) paired immunoglobulin-lik ( 175) 1051 215.3 6.8e-56
NP_840056 (OMIM: 605341) paired immunoglobulin-lik ( 230) 1035 212.3 7.4e-55
XP_011525740 (OMIM: 604200) PREDICTED: sialic acid ( 500) 158 40.3 0.0092
NP_003821 (OMIM: 604200) sialic acid-binding Ig-li ( 551) 158 40.4 0.0099
>>NP_038467 (OMIM: 605341) paired immunoglobulin-like ty (303 aa)
initn: 2018 init1: 2018 opt: 2018 Z-score: 2147.6 bits: 405.4 E(85289): 7e-113
Smith-Waterman score: 2018; 99.7% identity (99.7% similar) in 303 aa overlap (1-303:1-303)
10 20 30 40 50 60
pF1KE1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_038 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LATAPDVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ
::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
NP_038 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_038 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAREPFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_038 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAREPFQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 NTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLYSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_038 NTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLYSV
250 260 270 280 290 300
pF1KE1 LKA
:::
NP_038 LKA
>>NP_839956 (OMIM: 605342) paired immunoglobulin-like ty (227 aa)
initn: 1083 init1: 997 opt: 1215 Z-score: 1297.0 bits: 247.6 E(85289): 1.7e-65
Smith-Waterman score: 1215; 80.8% identity (90.4% similar) in 229 aa overlap (1-227:1-221)
10 20 30 40 50 60
pF1KE1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
:::::::::: :: :::::::.::::::::::::::::::::::::::::::::::::::
NP_839 MGRPLLLPLLLLLQPPAFLQPGGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LATAPDVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ
:: .:.:::::::::::::::::::::::::::::::::::::::.:::::::::.:.::
NP_839 LAIVPNVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV
:::::::::::: ::::: :::.::::.::::::::: ::: ::::: .::::
NP_839 SVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTT--------TWRPSSTTTIAGLRV
130 140 150 160 170
190 200 210 220 230
pF1KE1 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLR--WRRRKGQQRTKATTPAREP
:..: .:.:::.::.::. ::.::.:: .::::.::: ::::::..
NP_839 TESKGHSESWHLSLDTAIRVALAVAVLKTVILGLLCLLLLWWRRRKGSRAPSSDF
180 190 200 210 220
240 250 260 270 280 290
pF1KE1 FQNTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLY
>>NP_840057 (OMIM: 605341) paired immunoglobulin-like ty (175 aa)
initn: 1051 init1: 1051 opt: 1051 Z-score: 1124.5 bits: 215.3 E(85289): 6.8e-56
Smith-Waterman score: 1051; 96.2% identity (97.5% similar) in 159 aa overlap (1-159:1-159)
10 20 30 40 50 60
pF1KE1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_840 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LATAPDVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ
::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
NP_840 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV
:::::::::::::::::::::::::::::::. . :::
NP_840 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQGNPSKTQRSHMRISGMKDKIQIPS
130 140 150 160 170
190 200 210 220 230 240
pF1KE1 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAREPFQ
>>NP_840056 (OMIM: 605341) paired immunoglobulin-like ty (230 aa)
initn: 1035 init1: 1035 opt: 1035 Z-score: 1105.9 bits: 212.3 E(85289): 7.4e-55
Smith-Waterman score: 1402; 75.6% identity (75.6% similar) in 303 aa overlap (1-303:1-230)
10 20 30 40 50 60
pF1KE1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_840 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LATAPDVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ
::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
NP_840 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV
:::::::::::::::::::::::::::::::
NP_840 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQ-----------------------------
130 140 150
190 200 210 220 230 240
pF1KE1 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAREPFQ
::::::::::::::::
NP_840 --------------------------------------------GQQRTKATTPAREPFQ
160
250 260 270 280 290 300
pF1KE1 NTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLYSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_840 NTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLYSV
170 180 190 200 210 220
pF1KE1 LKA
:::
NP_840 LKA
230
>>XP_011525740 (OMIM: 604200) PREDICTED: sialic acid-bin (500 aa)
initn: 117 init1: 58 opt: 158 Z-score: 170.6 bits: 40.3 E(85289): 0.0092
Smith-Waterman score: 158; 28.7% identity (53.5% similar) in 157 aa overlap (9-160:1-146)
10 20 30 40 50 60
pF1KE1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
.::::: : : .:: : : : : .... : : .: :: :::.
XP_011 MLPLLLLP--LLWGGSLQEKPVYELQVQ--KSVTVQEGLCVLVPCSFSYPWR
10 20 30 40
70 80 90 100 110
pF1KE1 -LATAPDVRISW-RRGH--FHGQSFYSTRPPS-IHKDYVNRLFLNWTEGQKSGFLRISNL
..: . . : : :. .... .. : .. . .:. : .:. : :..
XP_011 SWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDA
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE1 QKQDQSVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTT
. .: . :: ::: ::. : . .::.. ::. ..:
XP_011 RMEDTGSYFFRVE-----RGRDVKYSYQQNKLNLE--VTALIEKPDIHFLEPLESGRPTR
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE1 TGLRVTQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPA
XP_011 LSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQ
170 180 190 200 210 220
>>NP_003821 (OMIM: 604200) sialic acid-binding Ig-like l (551 aa)
initn: 117 init1: 58 opt: 158 Z-score: 170.0 bits: 40.4 E(85289): 0.0099
Smith-Waterman score: 158; 28.7% identity (53.5% similar) in 157 aa overlap (9-160:1-146)
10 20 30 40 50 60
pF1KE1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
.::::: : : .:: : : : : .... : : .: :: :::.
NP_003 MLPLLLLP--LLWGGSLQEKPVYELQVQ--KSVTVQEGLCVLVPCSFSYPWR
10 20 30 40
70 80 90 100 110
pF1KE1 -LATAPDVRISW-RRGH--FHGQSFYSTRPPS-IHKDYVNRLFLNWTEGQKSGFLRISNL
..: . . : : :. .... .. : .. . .:. : .:. : :..
NP_003 SWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDA
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE1 QKQDQSVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTT
. .: . :: ::: ::. : . .::.. ::. ..:
NP_003 RMEDTGSYFFRVE-----RGRDVKYSYQQNKLNLE--VTALIEKPDIHFLEPLESGRPTR
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE1 TGLRVTQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPA
NP_003 LSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQ
170 180 190 200 210 220
303 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 16:21:53 2016 done: Sun Nov 6 16:21:55 2016
Total Scan time: 8.670 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]