FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1789, 296 aa
  1>>>pF1KE1789 296 - 296 aa - 296 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8089+/-0.000753; mu= 13.1605+/- 0.046
 mean_var=75.5080+/-14.909, 0's: 0 Z-trim(109.3): 9  B-trim: 0 in 0/51
 Lambda= 0.147597
 statistics sampled from 10791 (10794) to 10791 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.332), width:  16
 Scan time:  2.680

The best scores are:                                      opt bits E(32554)
CCDS4178.1 CAMLG gene_id:819|Hs108|chr5            ( 296) 1926 419.1 1.9e-117


>>CCDS4178.1 CAMLG gene_id:819|Hs108|chr5                 (296 aa)
 initn: 1926 init1: 1926 opt: 1926  Z-score: 2221.9  bits: 419.1 E(32554): 1.9e-117
Smith-Waterman score: 1926; 100.0% identity (100.0% similar) in 296 aa overlap (1-296:1-296)

               10        20        30        40        50        60
pF1KE1 MESMAVATDGGERPGVPAGSGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGSGAEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MESMAVATDGGERPGVPAGSGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGSGAEEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SQTKSKQQDSDKLNSLSVPSVSKRVVLGDSVSTGTTDQQGGVAEVKGTQLGDKLDSFIKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SQTKSKQQDSDKLNSLSVPSVSKRVVLGDSVSTGTTDQQGGVAEVKGTQLGDKLDSFIKP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 PECSSDVNLELRQRNRGDLTADSVQRGSRHGLEQYLSRFEEAMKLRKQLISEKPSQEDGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PECSSDVNLELRQRNRGDLTADSVQRGSRHGLEQYLSRFEEAMKLRKQLISEKPSQEDGN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 TTEEFDSFRIFRLVGCALLALGVRAFVCKYLSIFAPFLTLQLAYMGLYKYFPKSEKKIKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TTEEFDSFRIFRLVGCALLALGVRAFVCKYLSIFAPFLTLQLAYMGLYKYFPKSEKKIKT
              190       200       210       220       230       240

              250       260       270       280       290      
pF1KE1 TVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFIFCHELLDYWGSEVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFIFCHELLDYWGSEVP
              250       260       270       280       290      




296 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:08:54 2016 done: Sun Nov  6 17:08:54 2016
 Total Scan time:  2.680 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]