FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1788, 295 aa
  1>>>pF1KE1788 295 - 295 aa - 295 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6856+/-0.000809; mu= 19.3180+/- 0.048
 mean_var=67.0476+/-13.580, 0's: 0 Z-trim(107.9): 15  B-trim: 61 in 1/51
 Lambda= 0.156633
 statistics sampled from 9848 (9858) to 9848 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.303), width:  16
 Scan time:  2.320

The best scores are:                                      opt bits E(32554)
CCDS44875.1 TMBIM6 gene_id:7009|Hs108|chr12        ( 295) 1980 456.0 1.5e-128
CCDS31797.1 TMBIM6 gene_id:7009|Hs108|chr12        ( 237) 1555 359.9 1.1e-99


>>CCDS44875.1 TMBIM6 gene_id:7009|Hs108|chr12             (295 aa)
 initn: 1980 init1: 1980 opt: 1980  Z-score: 2421.3  bits: 456.0 E(32554): 1.5e-128
Smith-Waterman score: 1980; 100.0% identity (100.0% similar) in 295 aa overlap (1-295:1-295)

               10        20        30        40        50        60
pF1KE1 MSHSSVTREAPQLLSQRQRREVRGVWGWGCLPGPRGGPALFGLVTFGQSGDCCTDSGTMN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MSHSSVTREAPQLLSQRQRREVRGVWGWGCLPGPRGGPALFGLVTFGQSGDCCTDSGTMN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 IFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHMVTHFIQAGLLSAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 IFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHMVTHFIQAGLLSAL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GSLILMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALEFCIAVNPSILPTAFMGTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GSLILMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALEFCIAVNPSILPTAFMGTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 MIFTCFTLSALYARRRSYLFLGGILMSALSLLLLSSLGNVFFGSIWLFQANLYVGLVVMC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MIFTCFTLSALYARRRSYLFLGGILMSALSLLLLSSLGNVFFGSIWLFQANLYVGLVVMC
              190       200       210       220       230       240

              250       260       270       280       290     
pF1KE1 GFVLFDTQLIIEKAEHGDQDYIWHCIDLFLDFITVFRKLMMILAMNEKDKKKEKK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GFVLFDTQLIIEKAEHGDQDYIWHCIDLFLDFITVFRKLMMILAMNEKDKKKEKK
              250       260       270       280       290     

>>CCDS31797.1 TMBIM6 gene_id:7009|Hs108|chr12             (237 aa)
 initn: 1555 init1: 1555 opt: 1555  Z-score: 1903.5  bits: 359.9 E(32554): 1.1e-99
Smith-Waterman score: 1555; 100.0% identity (100.0% similar) in 237 aa overlap (59-295:1-237)

       30        40        50        60        70        80        
pF1KE1 GCLPGPRGGPALFGLVTFGQSGDCCTDSGTMNIFDRKINFDALLKFSHITPSTQQHLKKV
                                     ::::::::::::::::::::::::::::::
CCDS31                               MNIFDRKINFDALLKFSHITPSTQQHLKKV
                                             10        20        30

       90       100       110       120       130       140        
pF1KE1 YASFALCMFVAAAGAYVHMVTHFIQAGLLSALGSLILMIWLMATPHSHETEQKRLGLLAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YASFALCMFVAAAGAYVHMVTHFIQAGLLSALGSLILMIWLMATPHSHETEQKRLGLLAG
               40        50        60        70        80        90

      150       160       170       180       190       200        
pF1KE1 FAFLTGVGLGPALEFCIAVNPSILPTAFMGTAMIFTCFTLSALYARRRSYLFLGGILMSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FAFLTGVGLGPALEFCIAVNPSILPTAFMGTAMIFTCFTLSALYARRRSYLFLGGILMSA
              100       110       120       130       140       150

      210       220       230       240       250       260        
pF1KE1 LSLLLLSSLGNVFFGSIWLFQANLYVGLVVMCGFVLFDTQLIIEKAEHGDQDYIWHCIDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LSLLLLSSLGNVFFGSIWLFQANLYVGLVVMCGFVLFDTQLIIEKAEHGDQDYIWHCIDL
              160       170       180       190       200       210

      270       280       290     
pF1KE1 FLDFITVFRKLMMILAMNEKDKKKEKK
       :::::::::::::::::::::::::::
CCDS31 FLDFITVFRKLMMILAMNEKDKKKEKK
              220       230       




295 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:29:55 2016 done: Sun Nov  6 12:29:55 2016
 Total Scan time:  2.320 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]