FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1783, 289 aa
  1>>>pF1KE1783 289 - 289 aa - 289 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4298+/-0.000729; mu= 14.9800+/- 0.044
 mean_var=67.4911+/-13.233, 0's: 0 Z-trim(109.7): 8  B-trim: 0 in 0/50
 Lambda= 0.156117
 statistics sampled from 11078 (11081) to 11078 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.34), width:  16
 Scan time:  2.570

The best scores are:                                      opt bits E(32554)
CCDS41994.1 TRMT61A gene_id:115708|Hs108|chr14     ( 289) 1962 450.3 7.4e-127


>>CCDS41994.1 TRMT61A gene_id:115708|Hs108|chr14          (289 aa)
 initn: 1962 init1: 1962 opt: 1962  Z-score: 2390.9  bits: 450.3 E(32554): 7.4e-127
Smith-Waterman score: 1962; 100.0% identity (100.0% similar) in 289 aa overlap (1-289:1-289)

               10        20        30        40        50        60
pF1KE1 MSFVAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MSFVAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GRGGWVYVLHPTPELWTLNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GRGGWVYVLHPTPELWTLNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 IIRTIAPTGHLHTVEFHQQRAEKAREEFQEHRVGRWVTVRTQDVCRSGFGVSHVADAVFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 IIRTIAPTGHLHTVEFHQQRAEKAREEFQEHRVGRWVTVRTQDVCRSGFGVSHVADAVFL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 DIPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQALAARGFSELSTLEVLPQVYNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DIPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQALAARGFSELSTLEVLPQVYNV
              190       200       210       220       230       240

              250       260       270       280         
pF1KE1 RTVSLPPPDLGTGTDGPAGSDTSPFRSGTPMKEAVGHTGYLTFATKTPG
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RTVSLPPPDLGTGTDGPAGSDTSPFRSGTPMKEAVGHTGYLTFATKTPG
              250       260       270       280         




289 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 11:06:04 2016 done: Sun Nov  6 11:06:05 2016
 Total Scan time:  2.570 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]