FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1782, 241 aa
  1>>>pF1KE1782 241 - 241 aa - 241 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1722+/-0.000397; mu= 9.3214+/- 0.024
 mean_var=74.4500+/-14.306, 0's: 0 Z-trim(112.0): 47  B-trim: 0 in 0/58
 Lambda= 0.148642
 statistics sampled from 20731 (20758) to 20731 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.243), width:  16
 Scan time:  6.280

The best scores are:                                      opt bits E(85289)
NP_001078826 (OMIM: 607925) B- and T-lymphocyte at ( 241) 1629 358.8 4.9e-99
XP_011510749 (OMIM: 607925) PREDICTED: B- and T-ly ( 295)  946 212.3 7.3e-55
NP_861445 (OMIM: 607925) B- and T-lymphocyte atten ( 289)  944 211.9 9.7e-55
XP_016861237 (OMIM: 607925) PREDICTED: B- and T-ly ( 289)  944 211.9 9.7e-55


>>NP_001078826 (OMIM: 607925) B- and T-lymphocyte attenu  (241 aa)
 initn: 1629 init1: 1629 opt: 1629  Z-score: 1898.9  bits: 358.8 E(85289): 4.9e-99
Smith-Waterman score: 1629; 99.6% identity (99.6% similar) in 241 aa overlap (1-241:1-241)

               10        20        30        40        50        60
pF1KE1 MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SNLIESHSTTLYVTGKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SNLIESHSTTLYVTGKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 DPDLCFRMQEGSEVYSNPCLEENKPGIVYASLNHSVIGLNSRLARNVKEAPTEYASICVR
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
NP_001 DPDLCFRMQEGSEVYSNPCLEENKPGIVYASLNHSVIGPNSRLARNVKEAPTEYASICVR
              190       200       210       220       230       240

        
pF1KE1 S
       :
NP_001 S
        

>>XP_011510749 (OMIM: 607925) PREDICTED: B- and T-lympho  (295 aa)
 initn: 1615 init1: 944 opt: 946  Z-score: 1105.9  bits: 212.3 E(85289): 7.3e-55
Smith-Waterman score: 1376; 80.1% identity (80.1% similar) in 272 aa overlap (1-218:1-272)

               10        20        30        40        50        60
pF1KE1 MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ
               70        80        90       100       110       120

              130                                                  
pF1KE1 SNLIESHSTTLYVT----------------------------------------------
       ::::::::::::::                                              
XP_011 SNLIESHSTTLYVTAFTNIPDVKSASERPSKDEMASRPWLLYRLLPLGGLPLLITTCFCL
              130       140       150       160       170       180

                  140       150       160       170       180      
pF1KE1 --------GKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDNDPDLCF
               ::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FCCLRRHQGKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDNDPDLCF
              190       200       210       220       230       240

        190       200       210       220       230       240 
pF1KE1 RMQEGSEVYSNPCLEENKPGIVYASLNHSVIGLNSRLARNVKEAPTEYASICVRS
       ::::::::::::::::::::::::::::::::                       
XP_011 RMQEGSEVYSNPCLEENKPGIVYASLNHSVIGPNSRLARNVKEAPTEYASICVRS
              250       260       270       280       290     

>>NP_861445 (OMIM: 607925) B- and T-lymphocyte attenuato  (289 aa)
 initn: 1615 init1: 944 opt: 944  Z-score: 1103.7  bits: 211.9 E(85289): 9.7e-55
Smith-Waterman score: 1420; 82.1% identity (82.1% similar) in 273 aa overlap (1-225:1-273)

               10        20        30        40        50        60
pF1KE1 MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_861 MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_861 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ
               70        80        90       100       110       120

              130                                                  
pF1KE1 SNLIESHSTTLYVT----------------------------------------------
       ::::::::::::::                                              
NP_861 SNLIESHSTTLYVTDVKSASERPSKDEMASRPWLLYSLLPLGGLPLLITTCFCLFCCLRR
              130       140       150       160       170       180

            140       150       160       170       180       190  
pF1KE1 --GKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDNDPDLCFRMQEGS
         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_861 HQGKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDNDPDLCFRMQEGS
              190       200       210       220       230       240

            200       210       220       230       240 
pF1KE1 EVYSNPCLEENKPGIVYASLNHSVIGLNSRLARNVKEAPTEYASICVRS
       :::::::::::::::::::::::::: ::::::                
NP_861 EVYSNPCLEENKPGIVYASLNHSVIGPNSRLARNVKEAPTEYASICVRS
              250       260       270       280         

>>XP_016861237 (OMIM: 607925) PREDICTED: B- and T-lympho  (289 aa)
 initn: 1615 init1: 944 opt: 944  Z-score: 1103.7  bits: 211.9 E(85289): 9.7e-55
Smith-Waterman score: 1420; 82.1% identity (82.1% similar) in 273 aa overlap (1-225:1-273)

               10        20        30        40        50        60
pF1KE1 MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ
               70        80        90       100       110       120

              130                                                  
pF1KE1 SNLIESHSTTLYVT----------------------------------------------
       ::::::::::::::                                              
XP_016 SNLIESHSTTLYVTDVKSASERPSKDEMASRPWLLYRLLPLGGLPLLITTCFCLFCCLRR
              130       140       150       160       170       180

            140       150       160       170       180       190  
pF1KE1 --GKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDNDPDLCFRMQEGS
         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HQGKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDNDPDLCFRMQEGS
              190       200       210       220       230       240

            200       210       220       230       240 
pF1KE1 EVYSNPCLEENKPGIVYASLNHSVIGLNSRLARNVKEAPTEYASICVRS
       :::::::::::::::::::::::::: ::::::                
XP_016 EVYSNPCLEENKPGIVYASLNHSVIGPNSRLARNVKEAPTEYASICVRS
              250       260       270       280         




241 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:00:06 2016 done: Sun Nov  6 12:00:07 2016
 Total Scan time:  6.280 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]