Result of FASTA (omim) for
pFN21AE1777
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1777, 285 aa
1>>>pF1KE1777 285 - 285 aa - 285 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4340+/-0.000335; mu= 15.4449+/- 0.021
mean_var=78.8625+/-16.006, 0's: 0 Z-trim(115.5): 16 B-trim: 22 in 1/50
Lambda= 0.144424
statistics sampled from 25995 (26008) to 25995 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.305), width: 16
Scan time: 6.710
The best scores are: opt bits E(85289)
NP_001238982 (OMIM: 176851) protein-L-isoaspartate ( 285) 1898 404.7 1e-112
NP_005380 (OMIM: 176851) protein-L-isoaspartate(D- ( 285) 1898 404.7 1e-112
NP_001238978 (OMIM: 176851) protein-L-isoaspartate ( 286) 1877 400.3 2.1e-111
XP_011534170 (OMIM: 176851) PREDICTED: protein-L-i ( 223) 1379 296.5 3e-80
NP_001238980 (OMIM: 176851) protein-L-isoaspartate ( 250) 1161 251.1 1.6e-66
NP_001238979 (OMIM: 176851) protein-L-isoaspartate ( 250) 872 190.9 2.1e-48
NP_001238981 (OMIM: 176851) protein-L-isoaspartate ( 251) 851 186.5 4.4e-47
>>NP_001238982 (OMIM: 176851) protein-L-isoaspartate(D-a (285 aa)
initn: 1898 init1: 1898 opt: 1898 Z-score: 2144.6 bits: 404.7 E(85289): 1e-112
Smith-Waterman score: 1898; 99.6% identity (100.0% similar) in 285 aa overlap (1-285:1-285)
10 20 30 40 50 60
pF1KE1 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINN
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
NP_001 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
190 200 210 220 230 240
250 260 270 280
pF1KE1 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK
250 260 270 280
>>NP_005380 (OMIM: 176851) protein-L-isoaspartate(D-aspa (285 aa)
initn: 1898 init1: 1898 opt: 1898 Z-score: 2144.6 bits: 404.7 E(85289): 1e-112
Smith-Waterman score: 1898; 99.6% identity (100.0% similar) in 285 aa overlap (1-285:1-285)
10 20 30 40 50 60
pF1KE1 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINN
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
NP_005 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
190 200 210 220 230 240
250 260 270 280
pF1KE1 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK
:::::::::::::::::::::::::::::::::::::::::::::
NP_005 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK
250 260 270 280
>>NP_001238978 (OMIM: 176851) protein-L-isoaspartate(D-a (286 aa)
initn: 1877 init1: 1877 opt: 1877 Z-score: 2120.9 bits: 400.3 E(85289): 2.1e-111
Smith-Waterman score: 1877; 99.6% identity (100.0% similar) in 283 aa overlap (1-283:1-283)
10 20 30 40 50 60
pF1KE1 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINN
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
NP_001 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
190 200 210 220 230 240
250 260 270 280
pF1KE1 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK
:::::::::::::::::::::::::::::::::::::::::::
NP_001 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRDEL
250 260 270 280
>>XP_011534170 (OMIM: 176851) PREDICTED: protein-L-isoas (223 aa)
initn: 1379 init1: 1379 opt: 1379 Z-score: 1561.6 bits: 296.5 E(85289): 3e-80
Smith-Waterman score: 1379; 99.0% identity (100.0% similar) in 207 aa overlap (77-283:14-220)
50 60 70 80 90 100
pF1KE1 KVVLYLLRVCLAMAWKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMD
.:::::::::::::::::::::::::::::
XP_011 MITSTPIPKSSQSENGIIKTDKVFEVMLATDRSHYAKCNPYMD
10 20 30 40
110 120 130 140 150 160
pF1KE1 SPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIG
50 60 70 80 90 100
170 180 190 200 210 220
pF1KE1 IDHIKELVDDSINNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQA
:::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQA
110 120 130 140 150 160
230 240 250 260 270 280
pF1KE1 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRDEL
170 180 190 200 210 220
>>NP_001238980 (OMIM: 176851) protein-L-isoaspartate(D-a (250 aa)
initn: 1640 init1: 1161 opt: 1161 Z-score: 1315.4 bits: 251.1 E(85289): 1.6e-66
Smith-Waterman score: 1574; 87.0% identity (87.7% similar) in 285 aa overlap (1-285:1-250)
10 20 30 40 50 60
pF1KE1 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP
::::::::::::::::. ::::::::
NP_001 WKSGGASHSELIHNLRS-----------------------------------FQATISAP
70 80
130 140 150 160 170 180
pF1KE1 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINN
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
NP_001 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNN
90 100 110 120 130 140
190 200 210 220 230 240
pF1KE1 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
150 160 170 180 190 200
250 260 270 280
pF1KE1 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK
210 220 230 240 250
>>NP_001238979 (OMIM: 176851) protein-L-isoaspartate(D-a (250 aa)
initn: 872 init1: 872 opt: 872 Z-score: 990.0 bits: 190.9 E(85289): 2.1e-48
Smith-Waterman score: 1589; 87.4% identity (87.7% similar) in 285 aa overlap (1-285:1-250)
10 20 30 40 50 60
pF1KE1 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINN
:: ::::::::::::::::::::.::
NP_001 HM-----------------------------------VGCTGKVIGIDHIKELVDDSVNN
130 140
190 200 210 220 230 240
pF1KE1 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
150 160 170 180 190 200
250 260 270 280
pF1KE1 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK
210 220 230 240 250
>>NP_001238981 (OMIM: 176851) protein-L-isoaspartate(D-a (251 aa)
initn: 851 init1: 851 opt: 851 Z-score: 966.3 bits: 186.5 E(85289): 4.4e-47
Smith-Waterman score: 1568; 87.3% identity (87.6% similar) in 283 aa overlap (1-283:1-248)
10 20 30 40 50 60
pF1KE1 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINN
:: ::::::::::::::::::::.::
NP_001 HM-----------------------------------VGCTGKVIGIDHIKELVDDSVNN
130 140
190 200 210 220 230 240
pF1KE1 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
150 160 170 180 190 200
250 260 270 280
pF1KE1 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK
:::::::::::::::::::::::::::::::::::::::::::
NP_001 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRDEL
210 220 230 240 250
285 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:29:14 2016 done: Sun Nov 6 05:29:15 2016
Total Scan time: 6.710 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]