Result of FASTA (ccds) for
pFN21AE1777
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1777, 285 aa
1>>>pF1KE1777 285 - 285 aa - 285 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5310+/-0.000788; mu= 14.9742+/- 0.047
mean_var=78.7393+/-16.112, 0's: 0 Z-trim(108.8): 13 B-trim: 0 in 0/52
Lambda= 0.144537
statistics sampled from 10438 (10447) to 10438 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.321), width: 16
Scan time: 2.160
The best scores are: opt bits E(32554)
CCDS5219.2 PCMT1 gene_id:5110|Hs108|chr6 ( 285) 1898 404.9 3.4e-113
CCDS59041.1 PCMT1 gene_id:5110|Hs108|chr6 ( 286) 1877 400.5 7.1e-112
CCDS75534.1 PCMT1 gene_id:5110|Hs108|chr6 ( 250) 1161 251.2 5.6e-67
CCDS75533.1 PCMT1 gene_id:5110|Hs108|chr6 ( 250) 872 190.9 7.7e-49
>>CCDS5219.2 PCMT1 gene_id:5110|Hs108|chr6 (285 aa)
initn: 1898 init1: 1898 opt: 1898 Z-score: 2145.7 bits: 404.9 E(32554): 3.4e-113
Smith-Waterman score: 1898; 99.6% identity (100.0% similar) in 285 aa overlap (1-285:1-285)
10 20 30 40 50 60
pF1KE1 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINN
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS52 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
190 200 210 220 230 240
250 260 270 280
pF1KE1 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK
:::::::::::::::::::::::::::::::::::::::::::::
CCDS52 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK
250 260 270 280
>>CCDS59041.1 PCMT1 gene_id:5110|Hs108|chr6 (286 aa)
initn: 1877 init1: 1877 opt: 1877 Z-score: 2122.0 bits: 400.5 E(32554): 7.1e-112
Smith-Waterman score: 1877; 99.6% identity (100.0% similar) in 283 aa overlap (1-283:1-283)
10 20 30 40 50 60
pF1KE1 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINN
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS59 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
190 200 210 220 230 240
250 260 270 280
pF1KE1 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK
:::::::::::::::::::::::::::::::::::::::::::
CCDS59 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRDEL
250 260 270 280
>>CCDS75534.1 PCMT1 gene_id:5110|Hs108|chr6 (250 aa)
initn: 1640 init1: 1161 opt: 1161 Z-score: 1316.0 bits: 251.2 E(32554): 5.6e-67
Smith-Waterman score: 1574; 87.0% identity (87.7% similar) in 285 aa overlap (1-285:1-250)
10 20 30 40 50 60
pF1KE1 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP
::::::::::::::::. ::::::::
CCDS75 WKSGGASHSELIHNLRS-----------------------------------FQATISAP
70 80
130 140 150 160 170 180
pF1KE1 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINN
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS75 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNN
90 100 110 120 130 140
190 200 210 220 230 240
pF1KE1 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
150 160 170 180 190 200
250 260 270 280
pF1KE1 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK
:::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK
210 220 230 240 250
>>CCDS75533.1 PCMT1 gene_id:5110|Hs108|chr6 (250 aa)
initn: 872 init1: 872 opt: 872 Z-score: 990.3 bits: 190.9 E(32554): 7.7e-49
Smith-Waterman score: 1589; 87.4% identity (87.7% similar) in 285 aa overlap (1-285:1-250)
10 20 30 40 50 60
pF1KE1 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINN
:: ::::::::::::::::::::.::
CCDS75 HM-----------------------------------VGCTGKVIGIDHIKELVDDSVNN
130 140
190 200 210 220 230 240
pF1KE1 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
150 160 170 180 190 200
250 260 270 280
pF1KE1 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK
:::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK
210 220 230 240 250
285 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:29:13 2016 done: Sun Nov 6 05:29:14 2016
Total Scan time: 2.160 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]