FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1776, 284 aa
  1>>>pF1KE1776 284 - 284 aa - 284 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3202+/-0.000835; mu= 14.4926+/- 0.050
 mean_var=60.0664+/-12.298, 0's: 0 Z-trim(106.3): 15  B-trim: 0 in 0/50
 Lambda= 0.165485
 statistics sampled from 8872 (8877) to 8872 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.273), width:  16
 Scan time:  2.320

The best scores are:                                      opt bits E(32554)
CCDS61.1 ICMT gene_id:23463|Hs108|chr1             ( 284) 1919 466.5 9.6e-132


>>CCDS61.1 ICMT gene_id:23463|Hs108|chr1                  (284 aa)
 initn: 1919 init1: 1919 opt: 1919  Z-score: 2478.7  bits: 466.5 E(32554): 9.6e-132
Smith-Waterman score: 1919; 100.0% identity (100.0% similar) in 284 aa overlap (1-284:1-284)

               10        20        30        40        50        60
pF1KE1 MAGCAARAPPGSEARLSLATFLLGASVLALPLLTRAGLQGRTGLALYVAGLNALLLLLYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MAGCAARAPPGSEARLSLATFLLGASVLALPLLTRAGLQGRTGLALYVAGLNALLLLLYR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PPRYQIAIRACFLGFVFGCGTLLSFSQSSWSHFGWYMCSLSLFHYSEYLVTAVNNPKSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 PPRYQIAIRACFLGFVFGCGTLLSFSQSSWSHFGWYMCSLSLFHYSEYLVTAVNNPKSLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LDSFLLNHSLEYTVAALSSWLEFTLENIFWPELKQITWLSVTGLLMVVFGECLRKAAMFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LDSFLLNHSLEYTVAALSSWLEFTLENIFWPELKQITWLSVTGLLMVVFGECLRKAAMFT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 AGSNFNHVVQNEKSDTHTLVTSGVYAWFRHPSYVGWFYWSIGTQVMLCNPICGVSYALTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 AGSNFNHVVQNEKSDTHTLVTSGVYAWFRHPSYVGWFYWSIGTQVMLCNPICGVSYALTV
              190       200       210       220       230       240

              250       260       270       280    
pF1KE1 WRFFRDRTEEEEISLIHFFGEEYLEYKKRVPTGLPFIKGVKVDL
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS61 WRFFRDRTEEEEISLIHFFGEEYLEYKKRVPTGLPFIKGVKVDL
              250       260       270       280    




284 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 19:33:35 2016 done: Sun Nov  6 19:33:35 2016
 Total Scan time:  2.320 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]