FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1744, 245 aa
  1>>>pF1KE1744 245 - 245 aa - 245 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8179+/-0.000693; mu= 16.8722+/- 0.042
 mean_var=54.9819+/-11.213, 0's: 0 Z-trim(108.4): 9  B-trim: 481 in 1/51
 Lambda= 0.172967
 statistics sampled from 10201 (10205) to 10201 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.313), width:  16
 Scan time:  1.490

The best scores are:                                      opt bits E(32554)
CCDS4543.1 TPMT gene_id:7172|Hs108|chr6            ( 245) 1692 429.8 8.2e-121


>>CCDS4543.1 TPMT gene_id:7172|Hs108|chr6                 (245 aa)
 initn: 1692 init1: 1692 opt: 1692  Z-score: 2282.4  bits: 429.8 E(32554): 8.2e-121
Smith-Waterman score: 1692; 100.0% identity (100.0% similar) in 245 aa overlap (1-245:1-245)

               10        20        30        40        50        60
pF1KE1 MDGTRTSLDIEEYSDTEVQKNQVLTLEEWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MDGTRTSLDIEEYSDTEVQKNQVLTLEEWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 FKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LLCVLSYDPTKHPGPPFYVPHAEIERLFGKICNIRCLEKVDAFEERHKSWGIDCLFEKLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LLCVLSYDPTKHPGPPFYVPHAEIERLFGKICNIRCLEKVDAFEERHKSWGIDCLFEKLY
              190       200       210       220       230       240

            
pF1KE1 LLTEK
       :::::
CCDS45 LLTEK
            




245 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:58:57 2016 done: Sun Nov  6 16:58:57 2016
 Total Scan time:  1.490 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]