Result of FASTA (omim) for
pFN21AE1741
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1741, 244 aa
1>>>pF1KE1741 244 - 244 aa - 244 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6006+/-0.000294; mu= 19.0661+/- 0.018
mean_var=63.9622+/-12.892, 0's: 0 Z-trim(118.0): 74 B-trim: 66 in 1/57
Lambda= 0.160366
statistics sampled from 30394 (30468) to 30394 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.357), width: 16
Scan time: 6.270
The best scores are: opt bits E(85289)
NP_078794 (OMIM: 605699) NKG2D ligand 3 [Homo sapi ( 244) 1700 401.2 8.4e-112
NP_079494 (OMIM: 605697) NKG2D ligand 1 isoform 1 ( 244) 900 216.1 4.4e-56
XP_011534102 (OMIM: 609244) PREDICTED: retinoic ac ( 297) 848 204.2 2.1e-52
NP_001001788 (OMIM: 609244) retinoic acid early tr ( 334) 848 204.2 2.3e-52
XP_016866320 (OMIM: 609244) PREDICTED: retinoic ac ( 338) 848 204.2 2.3e-52
XP_011533788 (OMIM: 611047) PREDICTED: retinoic ac ( 246) 823 198.3 1e-50
NP_570970 (OMIM: 611047) retinoic acid early trans ( 246) 823 198.3 1e-50
NP_079493 (OMIM: 605698) NKG2D ligand 2 preproprot ( 246) 816 196.7 3.1e-50
XP_016866810 (OMIM: 605698) PREDICTED: NKG2D ligan ( 211) 730 176.8 2.7e-44
XP_016866811 (OMIM: 605697) PREDICTED: NKG2D ligan ( 211) 723 175.1 8.4e-44
XP_011533780 (OMIM: 609243) PREDICTED: NKG2D ligan ( 255) 528 130.1 3.7e-30
XP_016865775 (OMIM: 609243) PREDICTED: NKG2D ligan ( 257) 528 130.1 3.7e-30
XP_016865776 (OMIM: 609243) PREDICTED: NKG2D ligan ( 257) 528 130.1 3.7e-30
XP_016865774 (OMIM: 609243) PREDICTED: NKG2D ligan ( 257) 528 130.1 3.7e-30
NP_631904 (OMIM: 609243) NKG2D ligand 4 isoform 1 ( 263) 528 130.1 3.7e-30
XP_011533777 (OMIM: 609243) PREDICTED: NKG2D ligan ( 271) 528 130.1 3.8e-30
XP_011533778 (OMIM: 609243) PREDICTED: NKG2D ligan ( 271) 528 130.1 3.8e-30
NP_001230256 (OMIM: 609243) NKG2D ligand 4 isoform ( 209) 511 126.1 4.8e-29
NP_001230257 (OMIM: 609243) NKG2D ligand 4 isoform ( 212) 511 126.1 4.9e-29
XP_011533781 (OMIM: 609243) PREDICTED: NKG2D ligan ( 212) 511 126.1 4.9e-29
NP_001230254 (OMIM: 609243) NKG2D ligand 4 isoform ( 227) 416 104.1 2.1e-22
XP_016865777 (OMIM: 609243) PREDICTED: NKG2D ligan ( 202) 407 102.0 8.2e-22
NP_001522 (OMIM: 600764) major histocompatibility ( 341) 282 73.3 6.2e-13
NP_001181929 (OMIM: 600764) major histocompatibili ( 249) 267 69.7 5.4e-12
NP_001181964 (OMIM: 600764) major histocompatibili ( 214) 263 68.7 9.2e-12
XP_006711349 (OMIM: 600764) PREDICTED: major histo ( 312) 263 68.9 1.2e-11
NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 251 66.1 9.3e-11
NP_001297142 (OMIM: 600764) major histocompatibili ( 178) 240 63.3 3.2e-10
XP_016866297 (OMIM: 143010) PREDICTED: HLA class I ( 399) 243 64.3 3.6e-10
XP_016866296 (OMIM: 143010) PREDICTED: HLA class I ( 399) 243 64.3 3.6e-10
NP_005507 (OMIM: 143010) HLA class I histocompatib ( 358) 242 64.1 3.9e-10
XP_016866298 (OMIM: 143010) PREDICTED: HLA class I ( 359) 242 64.1 3.9e-10
NP_001229687 (OMIM: 142800,608579) HLA class I his ( 365) 232 61.7 2e-09
XP_011512859 (OMIM: 106300,142830,608579) PREDICTE ( 323) 230 61.2 2.5e-09
NP_005505 (OMIM: 106300,142830,608579) major histo ( 362) 230 61.3 2.7e-09
XP_016885777 (OMIM: 142800,608579) PREDICTED: HLA ( 362) 226 60.4 5.1e-09
XP_005275388 (OMIM: 142800,608579) PREDICTED: HLA ( 391) 226 60.4 5.4e-09
NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein ( 298) 221 59.1 9.9e-09
NP_001170990 (OMIM: 600169) MHC class I polypeptid ( 332) 210 56.6 6.2e-08
NP_001129491 (OMIM: 601437) IgG receptor FcRn larg ( 365) 209 56.4 7.9e-08
NP_004098 (OMIM: 601437) IgG receptor FcRn large s ( 365) 209 56.4 7.9e-08
NP_005922 (OMIM: 602436) MHC class I polypeptide-r ( 383) 209 56.4 8.1e-08
XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 205 55.4 1.1e-07
NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 199 54.1 3.7e-07
NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348) 199 54.1 3.8e-07
XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348) 199 54.1 3.8e-07
NP_000238 (OMIM: 600169) MHC class I polypeptide-r ( 383) 198 53.9 4.8e-07
NP_002118 (OMIM: 142871,600807) HLA class I histoc ( 338) 192 52.5 1.1e-06
XP_016866305 (OMIM: 142871,600807) PREDICTED: HLA ( 343) 192 52.5 1.1e-06
NP_002108 (OMIM: 142840,177900,609423) HLA class I ( 366) 191 52.3 1.4e-06
>>NP_078794 (OMIM: 605699) NKG2D ligand 3 [Homo sapiens] (244 aa)
initn: 1700 init1: 1700 opt: 1700 Z-score: 2128.2 bits: 401.2 E(85289): 8.4e-112
Smith-Waterman score: 1700; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KE1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTAPPTMAPGLAQPKAIATTLSPWSFLIILCFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTAPPTMAPGLAQPKAIATTLSPWSFLIILCFI
190 200 210 220 230 240
pF1KE1 LPGI
::::
NP_078 LPGI
>>NP_079494 (OMIM: 605697) NKG2D ligand 1 isoform 1 prec (244 aa)
initn: 921 init1: 828 opt: 900 Z-score: 1127.9 bits: 216.1 E(85289): 4.4e-56
Smith-Waterman score: 900; 54.9% identity (76.6% similar) in 244 aa overlap (1-243:1-243)
10 20 30 40 50 60
pF1KE1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK
::::::::.: : .: .:: :: .: .:.: : :.: : : ::::::. ::..
NP_079 MAAAASPAFLLCLPLL-HLLSGWSRAGWVDTHCLCYDFIITPKSRPEPQWCEVQGLVDER
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL
:: ::: . :. ... : ... .: .: .: : ::.: . :. .: : ..:.. : ::
NP_079 PFLHYDCVNHKAKAFASLGKKVNVTKTWEEQTETLRDVVDFLKGQLLDIQVENLIPIEPL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT
:::.::::: :: :. :::::: :.:.:::::::::::::..: ::..: :::::. .:
NP_079 TLQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVT
120 130 140 150 160 170
190 200 210 220 230
pF1KE1 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTAPPTMAPGLAQPKAIATTLSPWSFLII-LCF
::. .:. ::: ::..:::. .. :.:: ::..::: .::::.::::::::.::: :::
NP_079 MFFQKISLGDCKMWLEEFLMYWEQMLDPTKPPSLAPGTTQPKAMATTLSPWSLLIIFLCF
180 190 200 210 220 230
240
pF1KE1 ILPGI
:: :
NP_079 ILAGR
240
>>XP_011534102 (OMIM: 609244) PREDICTED: retinoic acid e (297 aa)
initn: 708 init1: 708 opt: 848 Z-score: 1061.7 bits: 204.2 E(85289): 2.1e-52
Smith-Waterman score: 848; 54.7% identity (74.5% similar) in 243 aa overlap (1-241:1-241)
10 20 30 40 50 60
pF1KE1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK
::::::::.: :: .: :: .: :: :: ::: :..:.: : : .:: ::.:::.:
XP_011 MAAAASPAFLLRLPLL-LLLSSWCRTGLADPHSLCYDITVIPKFRPGPRWCAVQGQVDEK
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL
.:: ::::: : .. : ..: .: :: : .:::: . : .: : .::.. :. ::
XP_011 TFLHYDCGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEPL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT
:::.::::: .:.:. ::::.::::. ::::::.:: ::.:: :::.::::::.:. .:
XP_011 TLQARMSCEQKAEGHGSGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMT
120 130 140 150 160 170
190 200 210 220 230
pF1KE1 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTA--PPTMAPGLAQPKAIATTLSPWSFLIILC
:...:: :: .::.:::: . :::.: ::::. : :::.: :::: :.:.:
XP_011 MSFHYISMGDCTGWLEDFLMGMDSTLEPSAGAPPTMSSGTAQPRATATTLI-LCCLLIMC
180 190 200 210 220 230
240
pF1KE1 FILPGI
...
XP_011 LLICSRHSLTQSHGHHPQSLQPPPHPPLLHPTWLLRRVLWSDRKNQAMQRQELKGHGEK
240 250 260 270 280 290
>>NP_001001788 (OMIM: 609244) retinoic acid early transc (334 aa)
initn: 708 init1: 708 opt: 848 Z-score: 1061.1 bits: 204.2 E(85289): 2.3e-52
Smith-Waterman score: 848; 54.7% identity (74.5% similar) in 243 aa overlap (1-241:1-241)
10 20 30 40 50 60
pF1KE1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK
::::::::.: :: .: :: .: :: :: ::: :..:.: : : .:: ::.:::.:
NP_001 MAAAASPAFLLRLPLL-LLLSSWCRTGLADPHSLCYDITVIPKFRPGPRWCAVQGQVDEK
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL
.:: ::::: : .. : ..: .: :: : .:::: . : .: : .::.. :. ::
NP_001 TFLHYDCGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEPL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT
:::.::::: .:.:. ::::.::::. ::::::.:: ::.:: :::.::::::.:. .:
NP_001 TLQARMSCEQKAEGHGSGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMT
120 130 140 150 160 170
190 200 210 220 230
pF1KE1 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTA--PPTMAPGLAQPKAIATTLSPWSFLIILC
:...:: :: .::.:::: . :::.: ::::. : :::.: :::: :.:.:
NP_001 MSFHYISMGDCTGWLEDFLMGMDSTLEPSAGAPPTMSSGTAQPRATATTLI-LCCLLIMC
180 190 200 210 220 230
240
pF1KE1 FILPGI
...
NP_001 LLICSRHSLTQSHGHHPQSLQPPPHPPLLHPTWLLRRVLWSDSYQIAKRPLSGGHVTRVT
240 250 260 270 280 290
>>XP_016866320 (OMIM: 609244) PREDICTED: retinoic acid e (338 aa)
initn: 708 init1: 708 opt: 848 Z-score: 1061.0 bits: 204.2 E(85289): 2.3e-52
Smith-Waterman score: 848; 54.7% identity (74.5% similar) in 243 aa overlap (1-241:1-241)
10 20 30 40 50 60
pF1KE1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK
::::::::.: :: .: :: .: :: :: ::: :..:.: : : .:: ::.:::.:
XP_016 MAAAASPAFLLRLPLL-LLLSSWCRTGLADPHSLCYDITVIPKFRPGPRWCAVQGQVDEK
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL
.:: ::::: : .. : ..: .: :: : .:::: . : .: : .::.. :. ::
XP_016 TFLHYDCGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEPL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT
:::.::::: .:.:. ::::.::::. ::::::.:: ::.:: :::.::::::.:. .:
XP_016 TLQARMSCEQKAEGHGSGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMT
120 130 140 150 160 170
190 200 210 220 230
pF1KE1 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTA--PPTMAPGLAQPKAIATTLSPWSFLIILC
:...:: :: .::.:::: . :::.: ::::. : :::.: :::: :.:.:
XP_016 MSFHYISMGDCTGWLEDFLMGMDSTLEPSAGAPPTMSSGTAQPRATATTLI-LCCLLIMC
180 190 200 210 220 230
240
pF1KE1 FILPGI
...
XP_016 LLICSRHSLTQSHGHHPQSLQPPPHPPLLHPTWLLRRVLWSDRYGGRIGSGAKGRWVRRE
240 250 260 270 280 290
>>XP_011533788 (OMIM: 611047) PREDICTED: retinoic acid e (246 aa)
initn: 753 init1: 707 opt: 823 Z-score: 1031.6 bits: 198.3 E(85289): 1e-50
Smith-Waterman score: 823; 53.8% identity (74.1% similar) in 247 aa overlap (1-244:1-246)
10 20 30 40 50 60
pF1KE1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK
::::: ::.: : .: .::: :: . : : ::: :..:.: : : .:: ::.:::.:
XP_011 MAAAAIPALLLCLPLL-FLLFGWSRARRDDPHSLCYDITVIPKFRPGPRWCAVQGQVDEK
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL
.:: ::::. : .. : ..: .: :: : .:::: . : .: : .::..::. ::
XP_011 TFLHYDCGNKTVTPVSPLGKKLNVTMAWKAQNPVLREVVDILTEQLLDIQLENYTPKEPL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT
:::.::::: .:.:. ::::::.::. ::::::..: ::.:: :::.::::::.:. ..
XP_011 TLQARMSCEQKAEGHSSGSWQFSIDGQTFLLFDSEKRMWTTVHPGARKMKEKWENDKDVA
120 130 140 150 160 170
190 200 210 220 230
pF1KE1 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTA--PPTMAPGLAQPKAIATTLSPWSFLIIL-
:...:: :: .::.:::: . :::.: : .:. : .: .: :::: .::::
XP_011 MSFHYISMGDCIGWLEDFLMGMDSTLEPSAGAPLAMSSGTTQLRATATTLILCCLLIILP
180 190 200 210 220 230
240
pF1KE1 CFILPGI
:::::::
XP_011 CFILPGI
240
>>NP_570970 (OMIM: 611047) retinoic acid early transcrip (246 aa)
initn: 753 init1: 707 opt: 823 Z-score: 1031.6 bits: 198.3 E(85289): 1e-50
Smith-Waterman score: 823; 53.8% identity (74.1% similar) in 247 aa overlap (1-244:1-246)
10 20 30 40 50 60
pF1KE1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK
::::: ::.: : .: .::: :: . : : ::: :..:.: : : .:: ::.:::.:
NP_570 MAAAAIPALLLCLPLL-FLLFGWSRARRDDPHSLCYDITVIPKFRPGPRWCAVQGQVDEK
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL
.:: ::::. : .. : ..: .: :: : .:::: . : .: : .::..::. ::
NP_570 TFLHYDCGNKTVTPVSPLGKKLNVTMAWKAQNPVLREVVDILTEQLLDIQLENYTPKEPL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT
:::.::::: .:.:. ::::::.::. ::::::..: ::.:: :::.::::::.:. ..
NP_570 TLQARMSCEQKAEGHSSGSWQFSIDGQTFLLFDSEKRMWTTVHPGARKMKEKWENDKDVA
120 130 140 150 160 170
190 200 210 220 230
pF1KE1 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTA--PPTMAPGLAQPKAIATTLSPWSFLIIL-
:...:: :: .::.:::: . :::.: : .:. : .: .: :::: .::::
NP_570 MSFHYISMGDCIGWLEDFLMGMDSTLEPSAGAPLAMSSGTTQLRATATTLILCCLLIILP
180 190 200 210 220 230
240
pF1KE1 CFILPGI
:::::::
NP_570 CFILPGI
240
>>NP_079493 (OMIM: 605698) NKG2D ligand 2 preproprotein (246 aa)
initn: 754 init1: 708 opt: 816 Z-score: 1022.8 bits: 196.7 E(85289): 3.1e-50
Smith-Waterman score: 816; 54.3% identity (73.3% similar) in 247 aa overlap (1-244:1-246)
10 20 30 40 50 60
pF1KE1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK
:::::. :: : .: :: :: .:::: ::: :..:.: : : .:: ::.:::.:
NP_079 MAAAAATKILLCLPLL-LLLSGWSRAGRADPHSLCYDITVIPKFRPGPRWCAVQGQVDEK
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL
.:: ::::. : .. : ..: .: :: : .:::: . : .: : .::..::. ::
NP_079 TFLHYDCGNKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLRDIQLENYTPKEPL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT
:::.::::: .:.:. :::::::::. ::::::..: ::.:: :::.::::::.:. ..
NP_079 TLQARMSCEQKAEGHSSGSWQFSFDGQIFLLFDSEKRMWTTVHPGARKMKEKWENDKVVA
120 130 140 150 160 170
190 200 210 220 230
pF1KE1 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTA--PPTMAPGLAQPKAIATTLSPWSFLIIL-
:.. :: :: .::.:::: . :::.: : .:. : .: .: :::: .::::
NP_079 MSFHYFSMGDCIGWLEDFLMGMDSTLEPSAGAPLAMSSGTTQLRATATTLILCCLLIILP
180 190 200 210 220 230
240
pF1KE1 CFILPGI
:::::::
NP_079 CFILPGI
240
>>XP_016866810 (OMIM: 605698) PREDICTED: NKG2D ligand 2 (211 aa)
initn: 742 init1: 704 opt: 730 Z-score: 916.2 bits: 176.8 E(85289): 2.7e-44
Smith-Waterman score: 730; 54.3% identity (74.3% similar) in 210 aa overlap (1-210:1-209)
10 20 30 40 50 60
pF1KE1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK
:::::. :: : .: :: :: .:::: ::: :..:.: : : .:: ::.:::.:
XP_016 MAAAAATKILLCLPLL-LLLSGWSRAGRADPHSLCYDITVIPKFRPGPRWCAVQGQVDEK
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL
.:: ::::. : .. : ..: .: :: : .:::: . : .: : .::..::. ::
XP_016 TFLHYDCGNKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLRDIQLENYTPKEPL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT
:::.::::: .:.:. :::::::::. ::::::..: ::.:: :::.::::::.:. ..
XP_016 TLQARMSCEQKAEGHSSGSWQFSFDGQIFLLFDSEKRMWTTVHPGARKMKEKWENDKVVA
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTAPPTMAPGLAQPKAIATTLSPWSFLIILCFI
:.. :: :: .::.:::: . :::.:
XP_016 MSFHYFSMGDCIGWLEDFLMGMDSTLEPSAGG
180 190 200 210
>>XP_016866811 (OMIM: 605697) PREDICTED: NKG2D ligand 1 (211 aa)
initn: 757 init1: 681 opt: 723 Z-score: 907.4 bits: 175.1 E(85289): 8.4e-44
Smith-Waterman score: 723; 51.4% identity (74.8% similar) in 210 aa overlap (1-210:1-209)
10 20 30 40 50 60
pF1KE1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK
::::::::.: : .: .:: :: .: .:.: : :.: : : ::::::. ::..
XP_016 MAAAASPAFLLCLPLL-HLLSGWSRAGWVDTHCLCYDFIITPKSRPEPQWCEVQGLVDER
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL
:: ::: . :. ... : ... .: .: .: : ::.: . :. .: : ..:.. : ::
XP_016 PFLHYDCVNHKAKAFASLGKKVNVTKTWEEQTETLRDVVDFLKGQLLDIQVENLIPIEPL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT
:::.::::: :: :. :::::: :.:.:::::::::::::..: ::..: :::::. .:
XP_016 TLQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVT
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTAPPTMAPGLAQPKAIATTLSPWSFLIILCFI
::. .:. ::: ::..:::. .. :.::.
XP_016 MFFQKISLGDCKMWLEEFLMYWEQMLDPTSGK
180 190 200 210
244 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 16:29:16 2016 done: Sun Nov 6 16:29:17 2016
Total Scan time: 6.270 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]