FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1737, 243 aa
  1>>>pF1KE1737 243 - 243 aa - 243 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4782+/-0.000623; mu= 15.0394+/- 0.038
 mean_var=87.4896+/-16.977, 0's: 0 Z-trim(113.6): 8  B-trim: 0 in 0/54
 Lambda= 0.137118
 statistics sampled from 14237 (14240) to 14237 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.794), E-opt: 0.2 (0.437), width:  16
 Scan time:  2.620

The best scores are:                                      opt bits E(32554)
CCDS5566.2 LAT2 gene_id:7462|Hs108|chr7            ( 243) 1649 335.2 2.5e-92


>>CCDS5566.2 LAT2 gene_id:7462|Hs108|chr7                 (243 aa)
 initn: 1649 init1: 1649 opt: 1649  Z-score: 1771.2  bits: 335.2 E(32554): 2.5e-92
Smith-Waterman score: 1649; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)

               10        20        30        40        50        60
pF1KE1 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA
              190       200       210       220       230       240

          
pF1KE1 TEA
       :::
CCDS55 TEA
          




243 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:23:30 2016 done: Sun Nov  6 16:23:30 2016
 Total Scan time:  2.620 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]