FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1736, 242 aa
  1>>>pF1KE1736 242 - 242 aa - 242 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7578+/-0.000317; mu= 17.3739+/- 0.020
 mean_var=62.3311+/-12.922, 0's: 0 Z-trim(115.4): 3  B-trim: 1250 in 1/48
 Lambda= 0.162451
 statistics sampled from 25768 (25771) to 25768 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.302), width:  16
 Scan time:  6.350

The best scores are:                                      opt bits E(85289)
NP_057041 (OMIM: 612491) methylthioribulose-1-phos ( 242) 1700 406.6  2e-113
XP_011518456 (OMIM: 612491) PREDICTED: methylthior ( 259) 1555 372.7 3.5e-103
XP_016873364 (OMIM: 612491) PREDICTED: methylthior ( 170) 1168 281.8 5.1e-76


>>NP_057041 (OMIM: 612491) methylthioribulose-1-phosphat  (242 aa)
 initn: 1700 init1: 1700 opt: 1700  Z-score: 2157.5  bits: 406.6 E(85289): 2e-113
Smith-Waterman score: 1700; 100.0% identity (100.0% similar) in 242 aa overlap (1-242:1-242)

               10        20        30        40        50        60
pF1KE1 MSGCDAREGDCCSRRCGAQDKEHPRYLIPELCKQFYHLGWVTGTGGGISLKHGDEIYIAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MSGCDAREGDCCSRRCGAQDKEHPRYLIPELCKQFYHLGWVTGTGGGISLKHGDEIYIAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SGVQKERIQPEDMFVCDINEKDISGPSPSKKLKKSQCTPLFMNAYTMRGAGAVIHTHSKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SGVQKERIQPEDMFVCDINEKDISGPSPSKKLKKSQCTPLFMNAYTMRGAGAVIHTHSKA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 AVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDLKDRMAHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 AVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDLKDRMAHA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 MNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAVSMKKVGLDPSQLPVGENG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAVSMKKVGLDPSQLPVGENG
              190       200       210       220       230       240

         
pF1KE1 IV
       ::
NP_057 IV
         

>>XP_011518456 (OMIM: 612491) PREDICTED: methylthioribul  (259 aa)
 initn: 1555 init1: 1555 opt: 1555  Z-score: 1973.4  bits: 372.7 E(85289): 3.5e-103
Smith-Waterman score: 1555; 99.6% identity (100.0% similar) in 225 aa overlap (18-242:35-259)

                            10        20        30        40       
pF1KE1              MSGCDAREGDCCSRRCGAQDKEHPRYLIPELCKQFYHLGWVTGTGGG
                                     .:::::::::::::::::::::::::::::
XP_011 VAYMAIKIEVQGHQSFAIPSGTFWLWRSLLSQDKEHPRYLIPELCKQFYHLGWVTGTGGG
           10        20        30        40        50        60    

        50        60        70        80        90       100       
pF1KE1 ISLKHGDEIYIAPSGVQKERIQPEDMFVCDINEKDISGPSPSKKLKKSQCTPLFMNAYTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ISLKHGDEIYIAPSGVQKERIQPEDMFVCDINEKDISGPSPSKKLKKSQCTPLFMNAYTM
           70        80        90       100       110       120    

       110       120       130       140       150       160       
pF1KE1 RGAGAVIHTHSKAAVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RGAGAVIHTHSKAAVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENT
          130       140       150       160       170       180    

       170       180       190       200       210       220       
pF1KE1 PEEKDLKDRMAHAMNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAVSMKKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PEEKDLKDRMAHAMNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAVSMKKV
          190       200       210       220       230       240    

       230       240  
pF1KE1 GLDPSQLPVGENGIV
       :::::::::::::::
XP_011 GLDPSQLPVGENGIV
          250         

>>XP_016873364 (OMIM: 612491) PREDICTED: methylthioribul  (170 aa)
 initn: 1168 init1: 1168 opt: 1168  Z-score: 1485.8  bits: 281.8 E(85289): 5.1e-76
Smith-Waterman score: 1168; 100.0% identity (100.0% similar) in 170 aa overlap (73-242:1-170)

             50        60        70        80        90       100  
pF1KE1 GTGGGISLKHGDEIYIAPSGVQKERIQPEDMFVCDINEKDISGPSPSKKLKKSQCTPLFM
                                     ::::::::::::::::::::::::::::::
XP_016                               MFVCDINEKDISGPSPSKKLKKSQCTPLFM
                                             10        20        30

            110       120       130       140       150       160  
pF1KE1 NAYTMRGAGAVIHTHSKAAVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NAYTMRGAGAVIHTHSKAAVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVP
               40        50        60        70        80        90

            170       180       190       200       210       220  
pF1KE1 IIENTPEEKDLKDRMAHAMNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IIENTPEEKDLKDRMAHAMNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAV
              100       110       120       130       140       150

            230       240  
pF1KE1 SMKKVGLDPSQLPVGENGIV
       ::::::::::::::::::::
XP_016 SMKKVGLDPSQLPVGENGIV
              160       170




242 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:24:52 2016 done: Sun Nov  6 21:24:53 2016
 Total Scan time:  6.350 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]