FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1736, 242 aa
  1>>>pF1KE1736 242 - 242 aa - 242 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0798+/-0.000731; mu= 15.4162+/- 0.044
 mean_var=61.2872+/-12.324, 0's: 0 Z-trim(108.6): 7  B-trim: 443 in 1/50
 Lambda= 0.163828
 statistics sampled from 10301 (10302) to 10301 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.316), width:  16
 Scan time:  2.130

The best scores are:                                      opt bits E(32554)
CCDS7895.1 APIP gene_id:51074|Hs108|chr11          ( 242) 1700 409.9 7.7e-115


>>CCDS7895.1 APIP gene_id:51074|Hs108|chr11               (242 aa)
 initn: 1700 init1: 1700 opt: 1700  Z-score: 2175.2  bits: 409.9 E(32554): 7.7e-115
Smith-Waterman score: 1700; 100.0% identity (100.0% similar) in 242 aa overlap (1-242:1-242)

               10        20        30        40        50        60
pF1KE1 MSGCDAREGDCCSRRCGAQDKEHPRYLIPELCKQFYHLGWVTGTGGGISLKHGDEIYIAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MSGCDAREGDCCSRRCGAQDKEHPRYLIPELCKQFYHLGWVTGTGGGISLKHGDEIYIAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SGVQKERIQPEDMFVCDINEKDISGPSPSKKLKKSQCTPLFMNAYTMRGAGAVIHTHSKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SGVQKERIQPEDMFVCDINEKDISGPSPSKKLKKSQCTPLFMNAYTMRGAGAVIHTHSKA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 AVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDLKDRMAHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 AVMATLLFPGREFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDLKDRMAHA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 MNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAVSMKKVGLDPSQLPVGENG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAVSMKKVGLDPSQLPVGENG
              190       200       210       220       230       240

         
pF1KE1 IV
       ::
CCDS78 IV
         




242 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:24:51 2016 done: Sun Nov  6 21:24:52 2016
 Total Scan time:  2.130 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]