Result of FASTA (ccds) for
pFN21AE1732
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1732, 240 aa
1>>>pF1KE1732 240 - 240 aa - 240 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7620+/-0.000813; mu= 6.5049+/- 0.050
mean_var=190.2749+/-37.575, 0's: 0 Z-trim(115.8): 5 B-trim: 0 in 0/52
Lambda= 0.092979
statistics sampled from 16363 (16367) to 16363 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.503), width: 16
Scan time: 2.590
The best scores are: opt bits E(32554)
CCDS11233.1 UNC119 gene_id:9094|Hs108|chr17 ( 240) 1661 233.9 7.5e-62
CCDS11234.1 UNC119 gene_id:9094|Hs108|chr17 ( 220) 1408 199.9 1.2e-51
CCDS82094.1 UNC119 gene_id:9094|Hs108|chr17 ( 145) 1001 145.1 2.3e-35
CCDS31914.1 UNC119B gene_id:84747|Hs108|chr12 ( 251) 898 131.5 5e-31
>>CCDS11233.1 UNC119 gene_id:9094|Hs108|chr17 (240 aa)
initn: 1661 init1: 1661 opt: 1661 Z-score: 1224.0 bits: 233.9 E(32554): 7.5e-62
Smith-Waterman score: 1661; 100.0% identity (100.0% similar) in 240 aa overlap (1-240:1-240)
10 20 30 40 50 60
pF1KE1 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 FCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGTP
190 200 210 220 230 240
>>CCDS11234.1 UNC119 gene_id:9094|Hs108|chr17 (220 aa)
initn: 1408 init1: 1408 opt: 1408 Z-score: 1041.0 bits: 199.9 E(32554): 1.2e-51
Smith-Waterman score: 1408; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)
10 20 30 40 50 60
pF1KE1 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 FCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGTP
:::::::::::::::::::::::
CCDS11 FCIPSSKNTCEHIYDFPPLSEELSARAGSSGSGEVGASRD
190 200 210 220
>>CCDS82094.1 UNC119 gene_id:9094|Hs108|chr17 (145 aa)
initn: 1001 init1: 1001 opt: 1001 Z-score: 748.3 bits: 145.1 E(32554): 2.3e-35
Smith-Waterman score: 1001; 100.0% identity (100.0% similar) in 145 aa overlap (96-240:1-145)
70 80 90 100 110 120
pF1KE1 LGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNA
::::::::::::::::::::::::::::::
CCDS82 MDSGTVLFEIKKPPVSERLPINRRDLDPNA
10 20 30
130 140 150 160 170 180
pF1KE1 GRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPS
40 50 60 70 80 90
190 200 210 220 230 240
pF1KE1 SKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGTP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGTP
100 110 120 130 140
>>CCDS31914.1 UNC119B gene_id:84747|Hs108|chr12 (251 aa)
initn: 913 init1: 664 opt: 898 Z-score: 670.6 bits: 131.5 E(32554): 5e-31
Smith-Waterman score: 899; 58.3% identity (77.7% similar) in 247 aa overlap (6-238:3-249)
10 20 30 40
pF1KE1 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPA-----ESESGSESEP----DAGPGP--
:.. ..:. :: ::.: .. . : . .. .. : : : :
CCDS31 MSGSNPKAAAAASAAGPGGLVAGKEEKKKAGGGVLNRLKARRQAPHHAADDGVGAAV
10 20 30 40 50
50 60 70 80 90 100
pF1KE1 RPGPLQRKQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPP
: . : :: :: :.:.: .:::.::.:::.:::.::::::...::::::: ::
CCDS31 TEQELLALDTIRPEHVLRLSRVTENYLCKPEDNIYSIDFTRFKIRDLETGTVLFEIAKPC
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE1 VSERLPINRR---DLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHY
::.. ... :.: .::::::::::::::::: ::::::::::::::.:::::::::
CCDS31 VSDQEEDEEEGGGDVDISAGRFVRYQFTPAFLRLRTVGATVEFTVGDKPVSNFRMIERHY
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE1 FRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRL
::..:::.::: ::::::::.:::::::.:: :::..: ::..::::.::::::::..:
CCDS31 FREHLLKNFDFDFGFCIPSSRNTCEHIYEFPQLSEDVIRLMIENPYETRSDSFYFVDNKL
180 190 200 210 220 230
230 240
pF1KE1 VMHNKADYSYSGTP
.:::::::.:.:
CCDS31 IMHNKADYAYNGGQ
240 250
240 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 15:28:52 2016 done: Mon Nov 7 15:28:53 2016
Total Scan time: 2.590 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]