Result of FASTA (omim) for
pFN21AE1729
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1729, 237 aa
1>>>pF1KE1729 237 - 237 aa - 237 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6776+/-0.000282; mu= 13.6698+/- 0.018
mean_var=90.3000+/-17.904, 0's: 0 Z-trim(120.6): 6 B-trim: 634 in 1/51
Lambda= 0.134968
statistics sampled from 36137 (36143) to 36137 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.775), E-opt: 0.2 (0.424), width: 16
Scan time: 5.210
The best scores are: opt bits E(85289)
NP_001284 (OMIM: 602158) methylosome subunit pICln ( 237) 1591 318.9 4.7e-87
NP_001298128 (OMIM: 602158) methylosome subunit pI ( 237) 1591 318.9 4.7e-87
NP_001298130 (OMIM: 602158) methylosome subunit pI ( 179) 1074 218.2 7.6e-57
NP_001298129 (OMIM: 602158) methylosome subunit pI ( 203) 783 161.6 9.6e-40
NP_001298131 (OMIM: 602158) methylosome subunit pI ( 167) 607 127.2 1.7e-29
>>NP_001284 (OMIM: 602158) methylosome subunit pICln iso (237 aa)
initn: 1591 init1: 1591 opt: 1591 Z-score: 1683.9 bits: 318.9 E(85289): 4.7e-87
Smith-Waterman score: 1591; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KE1 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE
130 140 150 160 170 180
190 200 210 220 230
pF1KE1 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH
190 200 210 220 230
>>NP_001298128 (OMIM: 602158) methylosome subunit pICln (237 aa)
initn: 1591 init1: 1591 opt: 1591 Z-score: 1683.9 bits: 318.9 E(85289): 4.7e-87
Smith-Waterman score: 1591; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KE1 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE
130 140 150 160 170 180
190 200 210 220 230
pF1KE1 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH
190 200 210 220 230
>>NP_001298130 (OMIM: 602158) methylosome subunit pICln (179 aa)
initn: 1243 init1: 1071 opt: 1074 Z-score: 1141.5 bits: 218.2 E(85289): 7.6e-57
Smith-Waterman score: 1093; 75.5% identity (75.5% similar) in 237 aa overlap (1-237:1-179)
10 20 30 40 50 60
pF1KE1 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE
:::::::::::::::::::::::::::::::::::::
NP_001 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAH-----------------------
130 140 150
190 200 210 220 230
pF1KE1 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH
::::::::::::::::::::::
NP_001 -----------------------------------DGMEVDTTPTVAGQFEDADVDH
160 170
>>NP_001298129 (OMIM: 602158) methylosome subunit pICln (203 aa)
initn: 804 init1: 782 opt: 783 Z-score: 834.5 bits: 161.6 E(85289): 9.6e-40
Smith-Waterman score: 1287; 85.2% identity (85.7% similar) in 237 aa overlap (1-237:1-203)
10 20 30 40 50 60
pF1KE1 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS
:::::::::::::::::::::::::::
NP_001 ISLHALSRDRSDCLGEHLYVMVNAKFE---------------------------------
70 80
130 140 150 160 170 180
pF1KE1 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE
.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 -VEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE
90 100 110 120 130 140
190 200 210 220 230
pF1KE1 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH
150 160 170 180 190 200
>>NP_001298131 (OMIM: 602158) methylosome subunit pICln (167 aa)
initn: 648 init1: 595 opt: 607 Z-score: 650.5 bits: 127.2 E(85289): 1.7e-29
Smith-Waterman score: 957; 70.5% identity (70.5% similar) in 237 aa overlap (1-237:1-167)
10 20 30 40 50 60
pF1KE1 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS
::::::::::::::::::::::::::::
NP_001 ISLHALSRDRSDCLGEHLYVMVNAKFEE--------------------------------
70 80
130 140 150 160 170 180
pF1KE1 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE
::::::::::::::::::::::
NP_001 --------------------------------------QGQGDIPTFYTYEEGLSHLTAE
90 100 110
190 200 210 220 230
pF1KE1 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH
120 130 140 150 160
237 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 15:03:58 2016 done: Sun Nov 6 15:03:58 2016
Total Scan time: 5.210 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]