Result of FASTA (ccds) for
pFN21AE1729
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1729, 237 aa
1>>>pF1KE1729 237 - 237 aa - 237 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5527+/-0.000646; mu= 14.2452+/- 0.040
mean_var=83.3571+/-16.636, 0's: 0 Z-trim(112.9): 7 B-trim: 578 in 1/51
Lambda= 0.140476
statistics sampled from 13590 (13594) to 13590 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.418), width: 16
Scan time: 1.860
The best scores are: opt bits E(32554)
CCDS8252.1 CLNS1A gene_id:1207|Hs108|chr11 ( 237) 1591 331.3 3.5e-91
CCDS81602.1 CLNS1A gene_id:1207|Hs108|chr11 ( 179) 1074 226.4 9.7e-60
CCDS81601.1 CLNS1A gene_id:1207|Hs108|chr11 ( 203) 783 167.5 6.1e-42
CCDS81600.1 CLNS1A gene_id:1207|Hs108|chr11 ( 167) 607 131.7 2.8e-31
>>CCDS8252.1 CLNS1A gene_id:1207|Hs108|chr11 (237 aa)
initn: 1591 init1: 1591 opt: 1591 Z-score: 1750.6 bits: 331.3 E(32554): 3.5e-91
Smith-Waterman score: 1591; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KE1 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE
130 140 150 160 170 180
190 200 210 220 230
pF1KE1 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH
190 200 210 220 230
>>CCDS81602.1 CLNS1A gene_id:1207|Hs108|chr11 (179 aa)
initn: 1243 init1: 1071 opt: 1074 Z-score: 1186.0 bits: 226.4 E(32554): 9.7e-60
Smith-Waterman score: 1093; 75.5% identity (75.5% similar) in 237 aa overlap (1-237:1-179)
10 20 30 40 50 60
pF1KE1 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE
:::::::::::::::::::::::::::::::::::::
CCDS81 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAH-----------------------
130 140 150
190 200 210 220 230
pF1KE1 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH
::::::::::::::::::::::
CCDS81 -----------------------------------DGMEVDTTPTVAGQFEDADVDH
160 170
>>CCDS81601.1 CLNS1A gene_id:1207|Hs108|chr11 (203 aa)
initn: 804 init1: 782 opt: 783 Z-score: 866.5 bits: 167.5 E(32554): 6.1e-42
Smith-Waterman score: 1287; 85.2% identity (85.7% similar) in 237 aa overlap (1-237:1-203)
10 20 30 40 50 60
pF1KE1 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS
:::::::::::::::::::::::::::
CCDS81 ISLHALSRDRSDCLGEHLYVMVNAKFE---------------------------------
70 80
130 140 150 160 170 180
pF1KE1 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE
.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 -VEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE
90 100 110 120 130 140
190 200 210 220 230
pF1KE1 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH
150 160 170 180 190 200
>>CCDS81600.1 CLNS1A gene_id:1207|Hs108|chr11 (167 aa)
initn: 648 init1: 595 opt: 607 Z-score: 674.9 bits: 131.7 E(32554): 2.8e-31
Smith-Waterman score: 957; 70.5% identity (70.5% similar) in 237 aa overlap (1-237:1-167)
10 20 30 40 50 60
pF1KE1 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS
::::::::::::::::::::::::::::
CCDS81 ISLHALSRDRSDCLGEHLYVMVNAKFEE--------------------------------
70 80
130 140 150 160 170 180
pF1KE1 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE
::::::::::::::::::::::
CCDS81 --------------------------------------QGQGDIPTFYTYEEGLSHLTAE
90 100 110
190 200 210 220 230
pF1KE1 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH
120 130 140 150 160
237 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 15:03:57 2016 done: Sun Nov 6 15:03:57 2016
Total Scan time: 1.860 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]