Result of FASTA (omim) for
pFN21AE1728
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1728, 236 aa
1>>>pF1KE1728 236 - 236 aa - 236 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.4928+/-0.000369; mu= 18.2629+/- 0.023
mean_var=57.1617+/-11.543, 0's: 0 Z-trim(113.0): 29 B-trim: 87 in 2/47
Lambda= 0.169637
statistics sampled from 22138 (22153) to 22138 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.26), width: 16
Scan time: 6.080
The best scores are: opt bits E(85289)
NP_680477 (OMIM: 602391) phosphatidylethanolamine ( 236) 1571 392.5 3.2e-109
NP_001254480 (OMIM: 602391) phosphatidylethanolami ( 214) 1344 337.0 1.6e-92
XP_006721481 (OMIM: 602391) PREDICTED: phosphatidy ( 215) 1344 337.0 1.6e-92
NP_001254481 (OMIM: 602391) phosphatidylethanolami ( 232) 1311 328.9 4.6e-90
NP_009100 (OMIM: 602391) phosphatidylethanolamine ( 199) 1303 326.9 1.6e-89
NP_680478 (OMIM: 602391) phosphatidylethanolamine ( 199) 1303 326.9 1.6e-89
XP_016879505 (OMIM: 602391) PREDICTED: phosphatidy ( 125) 806 205.1 4.6e-53
>>NP_680477 (OMIM: 602391) phosphatidylethanolamine N-me (236 aa)
initn: 1571 init1: 1571 opt: 1571 Z-score: 2081.8 bits: 392.5 E(85289): 3.2e-109
Smith-Waterman score: 1571; 99.6% identity (100.0% similar) in 236 aa overlap (1-236:1-236)
10 20 30 40 50 60
pF1KE1 MKRSGNPGAEVTNSSVAGPDCCGGLGNIDFRQADFCVMTRLLGYVDPLDPSFVAAVITIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_680 MKRSGNPGAEVTNSSVAGPDCCGGLGNIDFRQADFCVMTRLLGYVDPLDPSFVAAVITIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FNPLYWNVVARWEHKTRKLSRAFGSPYLACYSLSITILLLNFLRSHCFTQAMLSQPRMES
::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
NP_680 FNPLYWNVVARWEHKTRKLSRAFGSPYLACYSLSVTILLLNFLRSHCFTQAMLSQPRMES
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LDTPAAYSLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_680 LDTPAAYSLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMY
130 140 150 160 170 180
190 200 210 220 230
pF1KE1 WGSTANYLGWAIMHASPTGLLLTVLVALTYIVALLYEEPFTAEIYRQKASGSHKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_680 WGSTANYLGWAIMHASPTGLLLTVLVALTYIVALLYEEPFTAEIYRQKASGSHKRS
190 200 210 220 230
>>NP_001254480 (OMIM: 602391) phosphatidylethanolamine N (214 aa)
initn: 1344 init1: 1344 opt: 1344 Z-score: 1782.1 bits: 337.0 E(85289): 1.6e-92
Smith-Waterman score: 1357; 90.3% identity (90.7% similar) in 236 aa overlap (1-236:1-214)
10 20 30 40 50 60
pF1KE1 MKRSGNPGAEVTNSSVAGPDCCGGLGNIDFRQADFCVMTRLLGYVDPLDPSFVAAVITIT
:::::::::: ::::::::::::::::::::::::::::
NP_001 MKRSGNPGAE----------------------ADFCVMTRLLGYVDPLDPSFVAAVITIT
10 20 30
70 80 90 100 110 120
pF1KE1 FNPLYWNVVARWEHKTRKLSRAFGSPYLACYSLSITILLLNFLRSHCFTQAMLSQPRMES
::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
NP_001 FNPLYWNVVARWEHKTRKLSRAFGSPYLACYSLSVTILLLNFLRSHCFTQAMLSQPRMES
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE1 LDTPAAYSLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDTPAAYSLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMY
100 110 120 130 140 150
190 200 210 220 230
pF1KE1 WGSTANYLGWAIMHASPTGLLLTVLVALTYIVALLYEEPFTAEIYRQKASGSHKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WGSTANYLGWAIMHASPTGLLLTVLVALTYIVALLYEEPFTAEIYRQKASGSHKRS
160 170 180 190 200 210
>>XP_006721481 (OMIM: 602391) PREDICTED: phosphatidyleth (215 aa)
initn: 1344 init1: 1344 opt: 1344 Z-score: 1782.1 bits: 337.0 E(85289): 1.6e-92
Smith-Waterman score: 1344; 98.5% identity (100.0% similar) in 206 aa overlap (31-236:10-215)
10 20 30 40 50 60
pF1KE1 MKRSGNPGAEVTNSSVAGPDCCGGLGNIDFRQADFCVMTRLLGYVDPLDPSFVAAVITIT
..::::::::::::::::::::::::::::
XP_006 MFPGLPVCSQRADFCVMTRLLGYVDPLDPSFVAAVITIT
10 20 30
70 80 90 100 110 120
pF1KE1 FNPLYWNVVARWEHKTRKLSRAFGSPYLACYSLSITILLLNFLRSHCFTQAMLSQPRMES
::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
XP_006 FNPLYWNVVARWEHKTRKLSRAFGSPYLACYSLSVTILLLNFLRSHCFTQAMLSQPRMES
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE1 LDTPAAYSLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LDTPAAYSLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMY
100 110 120 130 140 150
190 200 210 220 230
pF1KE1 WGSTANYLGWAIMHASPTGLLLTVLVALTYIVALLYEEPFTAEIYRQKASGSHKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 WGSTANYLGWAIMHASPTGLLLTVLVALTYIVALLYEEPFTAEIYRQKASGSHKRS
160 170 180 190 200 210
>>NP_001254481 (OMIM: 602391) phosphatidylethanolamine N (232 aa)
initn: 1338 init1: 1305 opt: 1311 Z-score: 1738.0 bits: 328.9 E(85289): 4.6e-90
Smith-Waterman score: 1311; 97.5% identity (99.0% similar) in 199 aa overlap (1-199:1-198)
10 20 30 40 50 60
pF1KE1 MKRSGNPGAEVTNSSVAGPDCCGGLGNIDFRQADFCVMTRLLGYVDPLDPSFVAAVITIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKRSGNPGAEVTNSSVAGPDCCGGLGNIDFRQADFCVMTRLLGYVDPLDPSFVAAVITIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FNPLYWNVVARWEHKTRKLSRAFGSPYLACYSLSITILLLNFLRSHCFTQAMLSQPRMES
::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
NP_001 FNPLYWNVVARWEHKTRKLSRAFGSPYLACYSLSVTILLLNFLRSHCFTQAMLSQPRMES
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LDTPAAYSLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDTPAAYSLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMY
130 140 150 160 170 180
190 200 210 220 230
pF1KE1 WGSTANYLGWAIMHASPTGLLLTVLVALTYIVALLYEEPFTAEIYRQKASGSHKRS
::::::::::::. : :.:
NP_001 WGSTANYLGWAIIPA-PAGAVGSEARQPHGPAPDGAGGPHLHSGSPIRRALHR
190 200 210 220 230
>>NP_009100 (OMIM: 602391) phosphatidylethanolamine N-me (199 aa)
initn: 1303 init1: 1303 opt: 1303 Z-score: 1728.3 bits: 326.9 E(85289): 1.6e-89
Smith-Waterman score: 1303; 99.5% identity (100.0% similar) in 199 aa overlap (38-236:1-199)
10 20 30 40 50 60
pF1KE1 GAEVTNSSVAGPDCCGGLGNIDFRQADFCVMTRLLGYVDPLDPSFVAAVITITFNPLYWN
::::::::::::::::::::::::::::::
NP_009 MTRLLGYVDPLDPSFVAAVITITFNPLYWN
10 20 30
70 80 90 100 110 120
pF1KE1 VVARWEHKTRKLSRAFGSPYLACYSLSITILLLNFLRSHCFTQAMLSQPRMESLDTPAAY
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
NP_009 VVARWEHKTRKLSRAFGSPYLACYSLSVTILLLNFLRSHCFTQAMLSQPRMESLDTPAAY
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE1 SLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMYWGSTANY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 SLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMYWGSTANY
100 110 120 130 140 150
190 200 210 220 230
pF1KE1 LGWAIMHASPTGLLLTVLVALTYIVALLYEEPFTAEIYRQKASGSHKRS
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 LGWAIMHASPTGLLLTVLVALTYIVALLYEEPFTAEIYRQKASGSHKRS
160 170 180 190
>>NP_680478 (OMIM: 602391) phosphatidylethanolamine N-me (199 aa)
initn: 1303 init1: 1303 opt: 1303 Z-score: 1728.3 bits: 326.9 E(85289): 1.6e-89
Smith-Waterman score: 1303; 99.5% identity (100.0% similar) in 199 aa overlap (38-236:1-199)
10 20 30 40 50 60
pF1KE1 GAEVTNSSVAGPDCCGGLGNIDFRQADFCVMTRLLGYVDPLDPSFVAAVITITFNPLYWN
::::::::::::::::::::::::::::::
NP_680 MTRLLGYVDPLDPSFVAAVITITFNPLYWN
10 20 30
70 80 90 100 110 120
pF1KE1 VVARWEHKTRKLSRAFGSPYLACYSLSITILLLNFLRSHCFTQAMLSQPRMESLDTPAAY
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
NP_680 VVARWEHKTRKLSRAFGSPYLACYSLSVTILLLNFLRSHCFTQAMLSQPRMESLDTPAAY
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE1 SLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMYWGSTANY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_680 SLGLALLGLGVVLVLSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMYWGSTANY
100 110 120 130 140 150
190 200 210 220 230
pF1KE1 LGWAIMHASPTGLLLTVLVALTYIVALLYEEPFTAEIYRQKASGSHKRS
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_680 LGWAIMHASPTGLLLTVLVALTYIVALLYEEPFTAEIYRQKASGSHKRS
160 170 180 190
>>XP_016879505 (OMIM: 602391) PREDICTED: phosphatidyleth (125 aa)
initn: 806 init1: 806 opt: 806 Z-score: 1073.7 bits: 205.1 E(85289): 4.6e-53
Smith-Waterman score: 806; 100.0% identity (100.0% similar) in 125 aa overlap (112-236:1-125)
90 100 110 120 130 140
pF1KE1 AFGSPYLACYSLSITILLLNFLRSHCFTQAMLSQPRMESLDTPAAYSLGLALLGLGVVLV
::::::::::::::::::::::::::::::
XP_016 MLSQPRMESLDTPAAYSLGLALLGLGVVLV
10 20 30
150 160 170 180 190 200
pF1KE1 LSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMYWGSTANYLGWAIMHASPTGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSSFFALGFAGTFLGDYFGILKEARVTVFPFNILDNPMYWGSTANYLGWAIMHASPTGLL
40 50 60 70 80 90
210 220 230
pF1KE1 LTVLVALTYIVALLYEEPFTAEIYRQKASGSHKRS
:::::::::::::::::::::::::::::::::::
XP_016 LTVLVALTYIVALLYEEPFTAEIYRQKASGSHKRS
100 110 120
236 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 15:28:24 2016 done: Mon Nov 7 15:28:25 2016
Total Scan time: 6.080 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]