Result of FASTA (omim) for
pFN21AE1727
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1727, 236 aa
1>>>pF1KE1727 236 - 236 aa - 236 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.7782+/-0.000486; mu= -0.6591+/- 0.030
mean_var=259.9213+/-55.427, 0's: 0 Z-trim(116.0): 15 B-trim: 63 in 2/53
Lambda= 0.079552
statistics sampled from 26841 (26856) to 26841 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.315), width: 16
Scan time: 6.580
The best scores are: opt bits E(85289)
NP_001171420 (OMIM: 270960,604759) synaptonemal co ( 236) 1494 184.3 1.6e-46
NP_001171419 (OMIM: 270960,604759) synaptonemal co ( 236) 1494 184.3 1.6e-46
NP_710161 (OMIM: 270960,604759) synaptonemal compl ( 236) 1494 184.3 1.6e-46
XP_016874857 (OMIM: 270960,604759) PREDICTED: syna ( 316) 1494 184.4 1.9e-46
XP_005268984 (OMIM: 270960,604759) PREDICTED: syna ( 242) 1406 174.2 1.8e-43
XP_005268983 (OMIM: 270960,604759) PREDICTED: syna ( 242) 1406 174.2 1.8e-43
XP_005268981 (OMIM: 270960,604759) PREDICTED: syna ( 242) 1406 174.2 1.8e-43
XP_005268982 (OMIM: 270960,604759) PREDICTED: syna ( 242) 1406 174.2 1.8e-43
XP_011536723 (OMIM: 270960,604759) PREDICTED: syna ( 296) 1406 174.3 2e-43
XP_005268979 (OMIM: 270960,604759) PREDICTED: syna ( 322) 1406 174.3 2.1e-43
NP_995321 (OMIM: 300478) protein FAM9B [Homo sapie ( 186) 260 42.6 0.00057
XP_011543766 (OMIM: 300478) PREDICTED: protein FAM ( 186) 260 42.6 0.00057
>>NP_001171420 (OMIM: 270960,604759) synaptonemal comple (236 aa)
initn: 1494 init1: 1494 opt: 1494 Z-score: 956.3 bits: 184.3 E(85289): 1.6e-46
Smith-Waterman score: 1494; 100.0% identity (100.0% similar) in 236 aa overlap (1-236:1-236)
10 20 30 40 50 60
pF1KE1 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE
130 140 150 160 170 180
190 200 210 220 230
pF1KE1 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETQQQEIASVRKSLQSMLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETQQQEIASVRKSLQSMLF
190 200 210 220 230
>>NP_001171419 (OMIM: 270960,604759) synaptonemal comple (236 aa)
initn: 1494 init1: 1494 opt: 1494 Z-score: 956.3 bits: 184.3 E(85289): 1.6e-46
Smith-Waterman score: 1494; 100.0% identity (100.0% similar) in 236 aa overlap (1-236:1-236)
10 20 30 40 50 60
pF1KE1 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE
130 140 150 160 170 180
190 200 210 220 230
pF1KE1 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETQQQEIASVRKSLQSMLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETQQQEIASVRKSLQSMLF
190 200 210 220 230
>>NP_710161 (OMIM: 270960,604759) synaptonemal complex p (236 aa)
initn: 1494 init1: 1494 opt: 1494 Z-score: 956.3 bits: 184.3 E(85289): 1.6e-46
Smith-Waterman score: 1494; 100.0% identity (100.0% similar) in 236 aa overlap (1-236:1-236)
10 20 30 40 50 60
pF1KE1 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_710 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_710 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_710 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE
130 140 150 160 170 180
190 200 210 220 230
pF1KE1 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETQQQEIASVRKSLQSMLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_710 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETQQQEIASVRKSLQSMLF
190 200 210 220 230
>>XP_016874857 (OMIM: 270960,604759) PREDICTED: synapton (316 aa)
initn: 1494 init1: 1494 opt: 1494 Z-score: 954.8 bits: 184.4 E(85289): 1.9e-46
Smith-Waterman score: 1494; 100.0% identity (100.0% similar) in 236 aa overlap (1-236:81-316)
10 20 30
pF1KE1 MVSSGKKYSRKSGKPSVEDQFTRAYDFETE
::::::::::::::::::::::::::::::
XP_016 ARLWRSCGGRLSTTSNWSSAIAVCFRKHLNMVSSGKKYSRKSGKPSVEDQFTRAYDFETE
60 70 80 90 100 110
40 50 60 70 80 90
pF1KE1 DKKDLSGSEEDVIEGKTAVIEKRRKKRSSAGVVEDMGGEVQNMLEGVGVDINKALLAKRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DKKDLSGSEEDVIEGKTAVIEKRRKKRSSAGVVEDMGGEVQNMLEGVGVDINKALLAKRK
120 130 140 150 160 170
100 110 120 130 140 150
pF1KE1 RLEMYTKASLKTSNQKIEHVWKTQQDQRQKLNQEYSQQFLTLFQQWDLDMQKAEEQEEKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RLEMYTKASLKTSNQKIEHVWKTQQDQRQKLNQEYSQQFLTLFQQWDLDMQKAEEQEEKI
180 190 200 210 220 230
160 170 180 190 200 210
pF1KE1 LNMFRQQQKILQQSRIVQSQRLKTIKQLYEQFIKSMEELEKNHDNLLTGAQNEFKKEMAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LNMFRQQQKILQQSRIVQSQRLKTIKQLYEQFIKSMEELEKNHDNLLTGAQNEFKKEMAM
240 250 260 270 280 290
220 230
pF1KE1 LQKKIMMETQQQEIASVRKSLQSMLF
::::::::::::::::::::::::::
XP_016 LQKKIMMETQQQEIASVRKSLQSMLF
300 310
>>XP_005268984 (OMIM: 270960,604759) PREDICTED: synapton (242 aa)
initn: 1488 init1: 1394 opt: 1406 Z-score: 901.6 bits: 174.2 E(85289): 1.8e-43
Smith-Waterman score: 1406; 93.7% identity (97.5% similar) in 238 aa overlap (1-236:1-238)
10 20 30 40 50 60
pF1KE1 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE
130 140 150 160 170 180
190 200 210 220 230
pF1KE1 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMET--QQQEIASVRKSLQSMLF
::::::::::::::::::::::::::::::::::::::: .. :: ..: .... .:
XP_005 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETVSDHIEIEKIRINISNEIFYL
190 200 210 220 230 240
XP_005 LK
>>XP_005268983 (OMIM: 270960,604759) PREDICTED: synapton (242 aa)
initn: 1488 init1: 1394 opt: 1406 Z-score: 901.6 bits: 174.2 E(85289): 1.8e-43
Smith-Waterman score: 1406; 93.7% identity (97.5% similar) in 238 aa overlap (1-236:1-238)
10 20 30 40 50 60
pF1KE1 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE
130 140 150 160 170 180
190 200 210 220 230
pF1KE1 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMET--QQQEIASVRKSLQSMLF
::::::::::::::::::::::::::::::::::::::: .. :: ..: .... .:
XP_005 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETVSDHIEIEKIRINISNEIFYL
190 200 210 220 230 240
XP_005 LK
>>XP_005268981 (OMIM: 270960,604759) PREDICTED: synapton (242 aa)
initn: 1488 init1: 1394 opt: 1406 Z-score: 901.6 bits: 174.2 E(85289): 1.8e-43
Smith-Waterman score: 1406; 93.7% identity (97.5% similar) in 238 aa overlap (1-236:1-238)
10 20 30 40 50 60
pF1KE1 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE
130 140 150 160 170 180
190 200 210 220 230
pF1KE1 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMET--QQQEIASVRKSLQSMLF
::::::::::::::::::::::::::::::::::::::: .. :: ..: .... .:
XP_005 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETVSDHIEIEKIRINISNEIFYL
190 200 210 220 230 240
XP_005 LK
>>XP_005268982 (OMIM: 270960,604759) PREDICTED: synapton (242 aa)
initn: 1488 init1: 1394 opt: 1406 Z-score: 901.6 bits: 174.2 E(85289): 1.8e-43
Smith-Waterman score: 1406; 93.7% identity (97.5% similar) in 238 aa overlap (1-236:1-238)
10 20 30 40 50 60
pF1KE1 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE
130 140 150 160 170 180
190 200 210 220 230
pF1KE1 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMET--QQQEIASVRKSLQSMLF
::::::::::::::::::::::::::::::::::::::: .. :: ..: .... .:
XP_005 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETVSDHIEIEKIRINISNEIFYL
190 200 210 220 230 240
XP_005 LK
>>XP_011536723 (OMIM: 270960,604759) PREDICTED: synapton (296 aa)
initn: 1488 init1: 1394 opt: 1406 Z-score: 900.5 bits: 174.3 E(85289): 2e-43
Smith-Waterman score: 1406; 93.7% identity (97.5% similar) in 238 aa overlap (1-236:55-292)
10 20 30
pF1KE1 MVSSGKKYSRKSGKPSVEDQFTRAYDFETE
::::::::::::::::::::::::::::::
XP_011 RRDWLFSCANPSLPQKRRGEGATSVRKHLNMVSSGKKYSRKSGKPSVEDQFTRAYDFETE
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE1 DKKDLSGSEEDVIEGKTAVIEKRRKKRSSAGVVEDMGGEVQNMLEGVGVDINKALLAKRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DKKDLSGSEEDVIEGKTAVIEKRRKKRSSAGVVEDMGGEVQNMLEGVGVDINKALLAKRK
90 100 110 120 130 140
100 110 120 130 140 150
pF1KE1 RLEMYTKASLKTSNQKIEHVWKTQQDQRQKLNQEYSQQFLTLFQQWDLDMQKAEEQEEKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RLEMYTKASLKTSNQKIEHVWKTQQDQRQKLNQEYSQQFLTLFQQWDLDMQKAEEQEEKI
150 160 170 180 190 200
160 170 180 190 200 210
pF1KE1 LNMFRQQQKILQQSRIVQSQRLKTIKQLYEQFIKSMEELEKNHDNLLTGAQNEFKKEMAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LNMFRQQQKILQQSRIVQSQRLKTIKQLYEQFIKSMEELEKNHDNLLTGAQNEFKKEMAM
210 220 230 240 250 260
220 230
pF1KE1 LQKKIMMET--QQQEIASVRKSLQSMLF
::::::::: .. :: ..: .... .:
XP_011 LQKKIMMETVSDHIEIEKIRINISNEIFYLLK
270 280 290
>>XP_005268979 (OMIM: 270960,604759) PREDICTED: synapton (322 aa)
initn: 1469 init1: 1394 opt: 1406 Z-score: 900.1 bits: 174.3 E(85289): 2.1e-43
Smith-Waterman score: 1406; 93.7% identity (97.5% similar) in 238 aa overlap (1-236:81-318)
10 20 30
pF1KE1 MVSSGKKYSRKSGKPSVEDQFTRAYDFETE
::::::::::::::::::::::::::::::
XP_005 ARLWRSCGGRLSTTSNWSSAIAVCFRKHLNMVSSGKKYSRKSGKPSVEDQFTRAYDFETE
60 70 80 90 100 110
40 50 60 70 80 90
pF1KE1 DKKDLSGSEEDVIEGKTAVIEKRRKKRSSAGVVEDMGGEVQNMLEGVGVDINKALLAKRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DKKDLSGSEEDVIEGKTAVIEKRRKKRSSAGVVEDMGGEVQNMLEGVGVDINKALLAKRK
120 130 140 150 160 170
100 110 120 130 140 150
pF1KE1 RLEMYTKASLKTSNQKIEHVWKTQQDQRQKLNQEYSQQFLTLFQQWDLDMQKAEEQEEKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RLEMYTKASLKTSNQKIEHVWKTQQDQRQKLNQEYSQQFLTLFQQWDLDMQKAEEQEEKI
180 190 200 210 220 230
160 170 180 190 200 210
pF1KE1 LNMFRQQQKILQQSRIVQSQRLKTIKQLYEQFIKSMEELEKNHDNLLTGAQNEFKKEMAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LNMFRQQQKILQQSRIVQSQRLKTIKQLYEQFIKSMEELEKNHDNLLTGAQNEFKKEMAM
240 250 260 270 280 290
220 230
pF1KE1 LQKKIMMET--QQQEIASVRKSLQSMLF
::::::::: .. :: ..: .... .:
XP_005 LQKKIMMETVSDHIEIEKIRINISNEIFYLLK
300 310 320
236 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 14:44:34 2016 done: Sun Nov 6 14:44:35 2016
Total Scan time: 6.580 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]