FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1724, 234 aa
  1>>>pF1KE1724 234 - 234 aa - 234 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8208+/-0.00076; mu= 16.4877+/- 0.046
 mean_var=53.9143+/-10.636, 0's: 0 Z-trim(107.2): 14  B-trim: 4 in 1/51
 Lambda= 0.174672
 statistics sampled from 9434 (9441) to 9434 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.29), width:  16
 Scan time:  1.860

The best scores are:                                      opt bits E(32554)
CCDS6810.1 TNFSF8 gene_id:944|Hs108|chr9           ( 234) 1547 397.4 4.1e-111
CCDS75884.1 TNFSF8 gene_id:944|Hs108|chr9          ( 164)  915 238.1 2.7e-63


>>CCDS6810.1 TNFSF8 gene_id:944|Hs108|chr9                (234 aa)
 initn: 1547 init1: 1547 opt: 1547  Z-score: 2108.3  bits: 397.4 E(32554): 4.1e-111
Smith-Waterman score: 1547; 100.0% identity (100.0% similar) in 234 aa overlap (1-234:1-234)

               10        20        30        40        50        60
pF1KE1 MDPGLQQALNGMAPPGDTAMHVPAGSVASHLGTTSRSYFYLTTATLALCLVFTVATIMVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MDPGLQQALNGMAPPGDTAMHVPAGSVASHLGTTSRSYFYLTTATLALCLVFTVATIMVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VVQRTDSIPNSPDNVPLKGGNCSEDLLCILKRAPFKKSWAYLQVAKHLNKTKLSWNKDGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 VVQRTDSIPNSPDNVPLKGGNCSEDLLCILKRAPFKKSWAYLQVAKHLNKTKLSWNKDGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LHGVRYQDGNLVIQFPGLYFIICQLQFLVQCPNNSVDLKLELLINKHIKKQALVTVCESG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 LHGVRYQDGNLVIQFPGLYFIICQLQFLVQCPNNSVDLKLELLINKHIKKQALVTVCESG
              130       140       150       160       170       180

              190       200       210       220       230    
pF1KE1 MQTKHVYQNLSQFLLDYLQVNTTISVNVDTFQYIDTSTFPLENVLSIFLYSNSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MQTKHVYQNLSQFLLDYLQVNTTISVNVDTFQYIDTSTFPLENVLSIFLYSNSD
              190       200       210       220       230    

>>CCDS75884.1 TNFSF8 gene_id:944|Hs108|chr9               (164 aa)
 initn: 915 init1: 915 opt: 915  Z-score: 1249.9  bits: 238.1 E(32554): 2.7e-63
Smith-Waterman score: 915; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KE1 MDPGLQQALNGMAPPGDTAMHVPAGSVASHLGTTSRSYFYLTTATLALCLVFTVATIMVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MDPGLQQALNGMAPPGDTAMHVPAGSVASHLGTTSRSYFYLTTATLALCLVFTVATIMVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VVQRTDSIPNSPDNVPLKGGNCSEDLLCILKRAPFKKSWAYLQVAKHLNKTKLSWNKDGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VVQRTDSIPNSPDNVPLKGGNCSEDLLCILKRAPFKKSWAYLQVAKHLNKTKLSWNKDGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LHGVRYQDGNLVIQFPGLYFIICQLQFLVQCPNNSVDLKLELLINKHIKKQALVTVCESG
       ::::::::::::::::                                            
CCDS75 LHGVRYQDGNLVIQFPDYCGMILHHSHSTLDSGKGHCCLETLQP                
              130       140       150       160                    




234 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:42:46 2016 done: Sun Nov  6 15:42:46 2016
 Total Scan time:  1.860 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]