Result of FASTA (omim) for
pFN21AE1717
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1717, 223 aa
1>>>pF1KE1717 223 - 223 aa - 223 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6547+/-0.000318; mu= 17.4605+/- 0.020
mean_var=59.4324+/-12.025, 0's: 0 Z-trim(114.9): 19 B-trim: 0 in 0/58
Lambda= 0.166365
statistics sampled from 24927 (24946) to 24927 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.292), width: 16
Scan time: 6.250
The best scores are: opt bits E(85289)
NP_001273727 (OMIM: 613560) N-terminal Xaa-Pro-Lys ( 223) 1513 371.1 8.1e-103
NP_001273726 (OMIM: 613560) N-terminal Xaa-Pro-Lys ( 223) 1513 371.1 8.1e-103
NP_001273725 (OMIM: 613560) N-terminal Xaa-Pro-Lys ( 223) 1513 371.1 8.1e-103
NP_054783 (OMIM: 613560) N-terminal Xaa-Pro-Lys N- ( 223) 1513 371.1 8.1e-103
NP_001273728 (OMIM: 613560) N-terminal Xaa-Pro-Lys ( 223) 1513 371.1 8.1e-103
NP_001273732 (OMIM: 613560) N-terminal Xaa-Pro-Lys ( 135) 921 228.9 3.3e-60
XP_005251996 (OMIM: 613560) PREDICTED: N-terminal ( 135) 921 228.9 3.3e-60
XP_016870131 (OMIM: 613560) PREDICTED: N-terminal ( 135) 921 228.9 3.3e-60
NP_001273731 (OMIM: 613560) N-terminal Xaa-Pro-Lys ( 135) 921 228.9 3.3e-60
NP_001273730 (OMIM: 613560) N-terminal Xaa-Pro-Lys ( 145) 731 183.3 1.8e-46
NP_001273729 (OMIM: 613560) N-terminal Xaa-Pro-Lys ( 145) 731 183.3 1.8e-46
>>NP_001273727 (OMIM: 613560) N-terminal Xaa-Pro-Lys N-m (223 aa)
initn: 1513 init1: 1513 opt: 1513 Z-score: 1966.9 bits: 371.1 E(85289): 8.1e-103
Smith-Waterman score: 1513; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223)
10 20 30 40 50 60
pF1KE1 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD
130 140 150 160 170 180
190 200 210 220
pF1KE1 SSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR
:::::::::::::::::::::::::::::::::::::::::::
NP_001 SSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR
190 200 210 220
>>NP_001273726 (OMIM: 613560) N-terminal Xaa-Pro-Lys N-m (223 aa)
initn: 1513 init1: 1513 opt: 1513 Z-score: 1966.9 bits: 371.1 E(85289): 8.1e-103
Smith-Waterman score: 1513; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223)
10 20 30 40 50 60
pF1KE1 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD
130 140 150 160 170 180
190 200 210 220
pF1KE1 SSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR
:::::::::::::::::::::::::::::::::::::::::::
NP_001 SSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR
190 200 210 220
>>NP_001273725 (OMIM: 613560) N-terminal Xaa-Pro-Lys N-m (223 aa)
initn: 1513 init1: 1513 opt: 1513 Z-score: 1966.9 bits: 371.1 E(85289): 8.1e-103
Smith-Waterman score: 1513; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223)
10 20 30 40 50 60
pF1KE1 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD
130 140 150 160 170 180
190 200 210 220
pF1KE1 SSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR
:::::::::::::::::::::::::::::::::::::::::::
NP_001 SSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR
190 200 210 220
>>NP_054783 (OMIM: 613560) N-terminal Xaa-Pro-Lys N-meth (223 aa)
initn: 1513 init1: 1513 opt: 1513 Z-score: 1966.9 bits: 371.1 E(85289): 8.1e-103
Smith-Waterman score: 1513; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223)
10 20 30 40 50 60
pF1KE1 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD
130 140 150 160 170 180
190 200 210 220
pF1KE1 SSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR
:::::::::::::::::::::::::::::::::::::::::::
NP_054 SSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR
190 200 210 220
>>NP_001273728 (OMIM: 613560) N-terminal Xaa-Pro-Lys N-m (223 aa)
initn: 1513 init1: 1513 opt: 1513 Z-score: 1966.9 bits: 371.1 E(85289): 8.1e-103
Smith-Waterman score: 1513; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223)
10 20 30 40 50 60
pF1KE1 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD
130 140 150 160 170 180
190 200 210 220
pF1KE1 SSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR
:::::::::::::::::::::::::::::::::::::::::::
NP_001 SSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR
190 200 210 220
>>NP_001273732 (OMIM: 613560) N-terminal Xaa-Pro-Lys N-m (135 aa)
initn: 921 init1: 921 opt: 921 Z-score: 1202.0 bits: 228.9 E(85289): 3.3e-60
Smith-Waterman score: 921; 100.0% identity (100.0% similar) in 135 aa overlap (89-223:1-135)
60 70 80 90 100 110
pF1KE1 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCG
::::::::::::::::::::::::::::::
NP_001 MVDITEDFLVQAKTYLGEEGKRVRNYFCCG
10 20 30
120 130 140 150 160 170
pF1KE1 LQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDD
40 50 60 70 80 90
180 190 200 210 220
pF1KE1 VDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR
100 110 120 130
>>XP_005251996 (OMIM: 613560) PREDICTED: N-terminal Xaa- (135 aa)
initn: 921 init1: 921 opt: 921 Z-score: 1202.0 bits: 228.9 E(85289): 3.3e-60
Smith-Waterman score: 921; 100.0% identity (100.0% similar) in 135 aa overlap (89-223:1-135)
60 70 80 90 100 110
pF1KE1 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCG
::::::::::::::::::::::::::::::
XP_005 MVDITEDFLVQAKTYLGEEGKRVRNYFCCG
10 20 30
120 130 140 150 160 170
pF1KE1 LQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDD
40 50 60 70 80 90
180 190 200 210 220
pF1KE1 VDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR
:::::::::::::::::::::::::::::::::::::::::::::
XP_005 VDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR
100 110 120 130
>>XP_016870131 (OMIM: 613560) PREDICTED: N-terminal Xaa- (135 aa)
initn: 921 init1: 921 opt: 921 Z-score: 1202.0 bits: 228.9 E(85289): 3.3e-60
Smith-Waterman score: 921; 100.0% identity (100.0% similar) in 135 aa overlap (89-223:1-135)
60 70 80 90 100 110
pF1KE1 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCG
::::::::::::::::::::::::::::::
XP_016 MVDITEDFLVQAKTYLGEEGKRVRNYFCCG
10 20 30
120 130 140 150 160 170
pF1KE1 LQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDD
40 50 60 70 80 90
180 190 200 210 220
pF1KE1 VDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR
:::::::::::::::::::::::::::::::::::::::::::::
XP_016 VDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR
100 110 120 130
>>NP_001273731 (OMIM: 613560) N-terminal Xaa-Pro-Lys N-m (135 aa)
initn: 921 init1: 921 opt: 921 Z-score: 1202.0 bits: 228.9 E(85289): 3.3e-60
Smith-Waterman score: 921; 100.0% identity (100.0% similar) in 135 aa overlap (89-223:1-135)
60 70 80 90 100 110
pF1KE1 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCG
::::::::::::::::::::::::::::::
NP_001 MVDITEDFLVQAKTYLGEEGKRVRNYFCCG
10 20 30
120 130 140 150 160 170
pF1KE1 LQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDD
40 50 60 70 80 90
180 190 200 210 220
pF1KE1 VDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR
100 110 120 130
>>NP_001273730 (OMIM: 613560) N-terminal Xaa-Pro-Lys N-m (145 aa)
initn: 731 init1: 731 opt: 731 Z-score: 955.1 bits: 183.3 E(85289): 1.8e-46
Smith-Waterman score: 731; 100.0% identity (100.0% similar) in 110 aa overlap (1-110:1-110)
10 20 30 40 50 60
pF1KE1 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRATSPISTWPS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD
NP_001 SCGAARAASAPTASSSSKTTWPRRA
130 140
223 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 11:15:01 2016 done: Sun Nov 6 11:15:02 2016
Total Scan time: 6.250 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]