FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1708, 214 aa
  1>>>pF1KE1708 214 - 214 aa - 214 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2798+/-0.000706; mu= 13.5000+/- 0.042
 mean_var=59.2249+/-12.007, 0's: 0 Z-trim(108.5): 18  B-trim: 554 in 1/48
 Lambda= 0.166656
 statistics sampled from 10210 (10222) to 10210 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.314), width:  16
 Scan time:  2.240

The best scores are:                                      opt bits E(32554)
CCDS33526.1 N6AMT1 gene_id:29104|Hs108|chr21       ( 214) 1403 345.3 1.7e-95
CCDS33525.1 N6AMT1 gene_id:29104|Hs108|chr21       ( 186)  690 173.8 6.2e-44


>>CCDS33526.1 N6AMT1 gene_id:29104|Hs108|chr21            (214 aa)
 initn: 1403 init1: 1403 opt: 1403  Z-score: 1827.8  bits: 345.3 E(32554): 1.7e-95
Smith-Waterman score: 1403; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KE1 MAGENFATPFHGHVGRGAFSDVYEPAEDTFLLLDALEAAAAELAGVEICLEVGSGSGVVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAGENFATPFHGHVGRGAFSDVYEPAEDTFLLLDALEAAAAELAGVEICLEVGSGSGVVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 AFLASMIGPQALYMCTDINPEAAACTLETARCNKVHIQPVITDLVKGLLPRLTEKVDLLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AFLASMIGPQALYMCTDINPEAAACTLETARCNKVHIQPVITDLVKGLLPRLTEKVDLLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 FNPPYVVTPPQEVGSHGIEAAWAGGRNGREVMDRFFPLVPDLLSPRGLFYLVTIKENNPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FNPPYVVTPPQEVGSHGIEAAWAGGRNGREVMDRFFPLVPDLLSPRGLFYLVTIKENNPE
              130       140       150       160       170       180

              190       200       210    
pF1KE1 EILKIMKTKGLQGTTALSRQAGQETLSVLKFTKS
       ::::::::::::::::::::::::::::::::::
CCDS33 EILKIMKTKGLQGTTALSRQAGQETLSVLKFTKS
              190       200       210    

>>CCDS33525.1 N6AMT1 gene_id:29104|Hs108|chr21            (186 aa)
 initn: 690 init1: 690 opt: 690  Z-score: 902.2  bits: 173.8 E(32554): 6.2e-44
Smith-Waterman score: 1150; 86.9% identity (86.9% similar) in 214 aa overlap (1-214:1-186)

               10        20        30        40        50        60
pF1KE1 MAGENFATPFHGHVGRGAFSDVYEPAEDTFLLLDALEAAAAELAGVEICLEVGSGSGVVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAGENFATPFHGHVGRGAFSDVYEPAEDTFLLLDALEAAAAELAGVEICLEVGSGSGVVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 AFLASMIGPQALYMCTDINPEAAACTLETARCNKVHIQPVITDLVKGLLPRLTEKVDLLV
       :::::::::::::::::::::::::::::::::::::::::::::               
CCDS33 AFLASMIGPQALYMCTDINPEAAACTLETARCNKVHIQPVITDLV---------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KE1 FNPPYVVTPPQEVGSHGIEAAWAGGRNGREVMDRFFPLVPDLLSPRGLFYLVTIKENNPE
                    :::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 -------------GSHGIEAAWAGGRNGREVMDRFFPLVPDLLSPRGLFYLVTIKENNPE
                      110       120       130       140       150  

              190       200       210    
pF1KE1 EILKIMKTKGLQGTTALSRQAGQETLSVLKFTKS
       ::::::::::::::::::::::::::::::::::
CCDS33 EILKIMKTKGLQGTTALSRQAGQETLSVLKFTKS
            160       170       180      




214 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:02:00 2016 done: Sun Nov  6 12:02:00 2016
 Total Scan time:  2.240 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]