Result of FASTA (omim) for
pFN21AE1702
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1702, 204 aa
1>>>pF1KE1702 204 - 204 aa - 204 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1700+/-0.000295; mu= 15.2665+/- 0.018
mean_var=83.3422+/-16.592, 0's: 0 Z-trim(118.8): 11 B-trim: 64 in 1/54
Lambda= 0.140489
statistics sampled from 32041 (32051) to 32041 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.376), width: 16
Scan time: 6.820
The best scores are: opt bits E(85289)
NP_757373 (OMIM: 138970) granulocyte colony-stimul ( 204) 1366 285.8 3.3e-77
NP_000750 (OMIM: 138970) granulocyte colony-stimul ( 207) 1350 282.5 3.2e-76
NP_001171618 (OMIM: 138970) granulocyte colony-sti ( 168) 684 147.5 1.2e-35
NP_757374 (OMIM: 138970) granulocyte colony-stimul ( 171) 676 145.9 3.7e-35
>>NP_757373 (OMIM: 138970) granulocyte colony-stimulatin (204 aa)
initn: 1366 init1: 1366 opt: 1366 Z-score: 1507.1 bits: 285.8 E(85289): 3.3e-77
Smith-Waterman score: 1366; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)
10 20 30 40 50 60
pF1KE1 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_757 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LQEKLCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_757 LQEKLCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_757 ALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGG
130 140 150 160 170 180
190 200
pF1KE1 VLVASHLQSFLEVSYRVLRHLAQP
::::::::::::::::::::::::
NP_757 VLVASHLQSFLEVSYRVLRHLAQP
190 200
>>NP_000750 (OMIM: 138970) granulocyte colony-stimulatin (207 aa)
initn: 1352 init1: 936 opt: 1350 Z-score: 1489.5 bits: 282.5 E(85289): 3.2e-76
Smith-Waterman score: 1350; 98.6% identity (98.6% similar) in 207 aa overlap (1-204:1-207)
10 20 30 40 50 60
pF1KE1 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 LQEKL---CATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQG
::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LQEKLVSECATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 LLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRR
130 140 150 160 170 180
180 190 200
pF1KE1 AGGVLVASHLQSFLEVSYRVLRHLAQP
:::::::::::::::::::::::::::
NP_000 AGGVLVASHLQSFLEVSYRVLRHLAQP
190 200
>>NP_001171618 (OMIM: 138970) granulocyte colony-stimula (168 aa)
initn: 683 init1: 683 opt: 684 Z-score: 761.1 bits: 147.5 E(85289): 1.2e-35
Smith-Waterman score: 1024; 82.4% identity (82.4% similar) in 204 aa overlap (1-204:1-168)
10 20 30 40 50 60
pF1KE1 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LQEKLCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQ
::::: :::::::::::::::::::
NP_001 LQEKL------------------------------------AGCLSQLHSGLFLYQGLLQ
70 80
130 140 150 160 170 180
pF1KE1 ALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGG
90 100 110 120 130 140
190 200
pF1KE1 VLVASHLQSFLEVSYRVLRHLAQP
::::::::::::::::::::::::
NP_001 VLVASHLQSFLEVSYRVLRHLAQP
150 160
>>NP_757374 (OMIM: 138970) granulocyte colony-stimulatin (171 aa)
initn: 1092 init1: 676 opt: 676 Z-score: 752.3 bits: 145.9 E(85289): 3.7e-35
Smith-Waterman score: 1029; 82.4% identity (82.8% similar) in 204 aa overlap (1-204:1-171)
10 20 30 40 50 60
pF1KE1 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_757 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LQEKLCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQ
::::: . :::::::::::::::::::
NP_757 LQEKLVSE---------------------------------AGCLSQLHSGLFLYQGLLQ
70 80
130 140 150 160 170 180
pF1KE1 ALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_757 ALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGG
90 100 110 120 130 140
190 200
pF1KE1 VLVASHLQSFLEVSYRVLRHLAQP
::::::::::::::::::::::::
NP_757 VLVASHLQSFLEVSYRVLRHLAQP
150 160 170
204 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 09:49:33 2016 done: Sun Nov 6 09:49:34 2016
Total Scan time: 6.820 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]