FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1701, 206 aa
  1>>>pF1KE1701 206 - 206 aa - 206 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0862+/-0.000723; mu= 14.7528+/- 0.044
 mean_var=66.6761+/-13.008, 0's: 0 Z-trim(109.4): 19  B-trim: 0 in 0/50
 Lambda= 0.157069
 statistics sampled from 10866 (10880) to 10866 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.334), width:  16
 Scan time:  1.840

The best scores are:                                      opt bits E(32554)
CCDS5360.1 SOSTDC1 gene_id:25928|Hs108|chr7        ( 206) 1430 332.3 1.2e-91
CCDS11468.1 SOST gene_id:50964|Hs108|chr17         ( 213)  462 113.0 1.4e-25


>>CCDS5360.1 SOSTDC1 gene_id:25928|Hs108|chr7             (206 aa)
 initn: 1430 init1: 1430 opt: 1430  Z-score: 1758.6  bits: 332.3 E(32554): 1.2e-91
Smith-Waterman score: 1430; 100.0% identity (100.0% similar) in 206 aa overlap (1-206:1-206)

               10        20        30        40        50        60
pF1KE1 MLPPAIHFYLLPLACILMKSCLAFKNDATEILYSHVVKPVPAHPSSNSTLNQARNGGRHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MLPPAIHFYLLPLACILMKSCLAFKNDATEILYSHVVKPVPAHPSSNSTLNQARNGGRHF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SNTGLDRNTRVQVGCRELRSTKYISDGQCTSISPLKELVCAGECLPLPVLPNWIGGGYGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SNTGLDRNTRVQVGCRELRSTKYISDGQCTSISPLKELVCAGECLPLPVLPNWIGGGYGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 KYWSRRSSQEWRCVNDKTRTQRIQLQCQDGSTRTYKITVVTACKCKRYTRQHNESSHNFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KYWSRRSSQEWRCVNDKTRTQRIQLQCQDGSTRTYKITVVTACKCKRYTRQHNESSHNFE
              130       140       150       160       170       180

              190       200      
pF1KE1 SMSPAKPVQHHRERKRASKSSKHSMS
       ::::::::::::::::::::::::::
CCDS53 SMSPAKPVQHHRERKRASKSSKHSMS
              190       200      

>>CCDS11468.1 SOST gene_id:50964|Hs108|chr17              (213 aa)
 initn: 469 init1: 227 opt: 462  Z-score: 572.9  bits: 113.0 E(32554): 1.4e-25
Smith-Waterman score: 464; 40.1% identity (63.8% similar) in 207 aa overlap (11-202:3-203)

               10            20                 30        40       
pF1KE1 MLPPAIHFYLLPLA----CILMKSCL---------AFKNDATEILYSHVVKPVPAHP-SS
                 ::::    :.:... .         :::::::::.      : :     .
CCDS11         MQLPLALCLVCLLVHTAFRVVEGQGWQAFKNDATEIIPELGEYPEPPPELEN
                       10        20        30        40        50  

         50        60        70        80        90       100      
pF1KE1 NSTLNQARNGGRHFSNTGLDRNTRVQVGCRELRSTKYISDGQCTSISPLKELVCAGECLP
       :.:.:.:.::::   .  .. .   . .::::. :.:..:: : : .:. ::::.:.: :
CCDS11 NKTMNRAENGGRP-PHHPFETKDVSEYSCRELHFTRYVTDGPCRSAKPVTELVCSGQCGP
             60         70        80        90       100       110 

        110       120       130       140       150        160     
pF1KE1 LPVLPNWIGGGYGTKYWSRRSSQEWRCVNDKTRTQRIQLQCQDG-STRTYKITVVTACKC
         .::: :: :   :.: : :. ..::. :. :.::.:: :  : . :. :. .:..:::
CCDS11 ARLLPNAIGRG---KWW-RPSGPDFRCIPDRYRAQRVQLLCPGGEAPRARKVRLVASCKC
             120           130       140       150       160       

         170       180       190       200            
pF1KE1 KRYTRQHNESSHNFESMSPAKPVQHHRERKRASKSSKHSMS      
       :: :: ::.:  .  .   :.: . .. : :: .:.:          
CCDS11 KRLTRFHNQSELKDFGTEAARPQKGRKPRPRA-RSAKANQAELENAY
       170       180       190        200       210   




206 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:26:24 2016 done: Sun Nov  6 16:26:24 2016
 Total Scan time:  1.840 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]