Result of FASTA (ccds) for
pFN21AE1700
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1700, 246 aa
1>>>pF1KE1700 246 - 246 aa - 246 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4623+/-0.000742; mu= 13.9988+/- 0.045
mean_var=67.6257+/-13.569, 0's: 0 Z-trim(109.1): 17 B-trim: 174 in 2/48
Lambda= 0.155962
statistics sampled from 10679 (10687) to 10679 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.328), width: 16
Scan time: 2.270
The best scores are: opt bits E(32554)
CCDS33910.1 RTP4 gene_id:64108|Hs108|chr3 ( 246) 1700 390.9 4.1e-109
CCDS2740.1 RTP3 gene_id:83597|Hs108|chr3 ( 232) 579 138.7 3.3e-33
CCDS33911.1 RTP2 gene_id:344892|Hs108|chr3 ( 225) 319 80.2 1.3e-15
CCDS3287.2 RTP1 gene_id:132112|Hs108|chr3 ( 263) 315 79.3 2.8e-15
CCDS42843.1 RTP5 gene_id:285093|Hs108|chr2 ( 572) 269 69.1 7.2e-12
>>CCDS33910.1 RTP4 gene_id:64108|Hs108|chr3 (246 aa)
initn: 1700 init1: 1700 opt: 1700 Z-score: 2072.3 bits: 390.9 E(32554): 4.1e-109
Smith-Waterman score: 1700; 98.8% identity (98.8% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KE1 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQYQQRAFGWFRCSSCQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQYQQRAFGWFRCSSCQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 SWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSNLVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSNLVQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 HILKKYYGNGMRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSYMTKPSKSLLPH
:::::::::: ::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS33 HILKKYYGNGTRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSCMTKPSKSLLPH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 LKTGNSSPGIGAVYLANQAKNQSDEAKEAKGSGYEKLGPSRDPDPLNICVFILLLVFIVV
::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
CCDS33 LKTGNSSPGIGAVYLANQAKNQSAEAKEAKGSGYEKLGPSRDPDPLNICVFILLLVFIVV
190 200 210 220 230 240
pF1KE1 KCFTSE
::::::
CCDS33 KCFTSE
>>CCDS2740.1 RTP3 gene_id:83597|Hs108|chr3 (232 aa)
initn: 604 init1: 551 opt: 579 Z-score: 709.6 bits: 138.7 E(32554): 3.3e-33
Smith-Waterman score: 584; 39.4% identity (64.3% similar) in 241 aa overlap (1-241:1-229)
10 20 30 40 50 60
pF1KE1 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQYQQRAFGWFRCSSCQR
:. : .:.: ::::..:.:: :::. : .: . : :: :::: .:. :.::::.:
CCDS27 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQYQQWTFARFQCSSCSR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 SWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSNLVQ
.:::::: .: : : . :.:::.::.: :::.:: .: :::.... :::.:::
CCDS27 NWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNLVF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 HILKKYYGNGMRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSYMTKPSKSLLPH
.:::: : . .. :.:.: ..:::: :.. ::::: :.:. .. ::..
CCDS27 RILKKCYRGRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPSQT----
130 140 150 160 170
190 200 210 220 230 240
pF1KE1 LKTGNSSPGIGAVYLANQAKNQSDEAKEAKGSGYEKLGPSRDPDPLNICVFILLLVFIVV
: . ..: .... . . : : . :. . . ::.....: :::
CCDS27 -------PRVHSIYKVEEVV-KPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVV
180 190 200 210 220
pF1KE1 KCFTSE
:
CCDS27 KTAI
230
>>CCDS33911.1 RTP2 gene_id:344892|Hs108|chr3 (225 aa)
initn: 329 init1: 154 opt: 319 Z-score: 393.6 bits: 80.2 E(32554): 1.3e-15
Smith-Waterman score: 330; 31.2% identity (53.2% similar) in 237 aa overlap (8-240:10-213)
10 20 30 40 50
pF1KE1 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQY-QQRAFGWFRCSS
:...: : .. ::: .: : .: ::. . :: ::::: .:.: : :.::
CCDS33 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 CQRSWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSN
: ..: ::.: :: : . .. :.::::.: : : .:. .. . . .. ...:
CCDS33 CWHTWQSAHVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 LVQHILKKYY---GNGMRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSYMTKPS
:. . .. : :. .: . : : . :::: :: :::
CCDS33 LITSLREQCYEEDGGQYRIH-----VASRPDSGPHRAEFCEACQEGIVHW-------KPS
130 140 150 160
180 190 200 210 220 230
pF1KE1 KSLLPHLKTGNSSPGIGAVYLANQAKNQSDEAKEAKGSGYEKLGPSRDPDPLNICVFILL
..:: . : .: :.. . :. ::::. :. : :.:
CCDS33 EKLLEEEVTTYTSE-------ASKPRAQA-------GSGYNFLS-------LRWCLFWAS
170 180 190 200
240
pF1KE1 LVFIVVKCFTSE
: ..::
CCDS33 LCLLVVYLQFSFLSPAFF
210 220
>>CCDS3287.2 RTP1 gene_id:132112|Hs108|chr3 (263 aa)
initn: 347 init1: 169 opt: 315 Z-score: 387.7 bits: 79.3 E(32554): 2.8e-15
Smith-Waterman score: 319; 32.6% identity (57.0% similar) in 172 aa overlap (8-178:46-208)
10 20 30
pF1KE1 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDC
:...: : ..:::: .: : .: ::. .
CCDS32 LPSLSVFSLRWKLPSLTTDETMCKSVTTDEWKKVFYEKMEEAKPADSWDLIIDPNLKHNV
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE1 LAQGWKQYQQ-RAFGWFRCSSCQRSWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKC
:. ::::: . .: : :.:: : ..: : : :: : . .. :.::::.: : : .:
CCDS32 LSPGWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQRAGSVRMRVFKQLCYEC
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE1 SWSQYEMPEFSSDSTMRILSNLVQHILKKYYGNGMRKSPEMPVILEVSLEGSHDTANCEA
. .. . . .. ...::. . .. ::. : . . . . : :::
CCDS32 GTARLDESSMLEENIEGLVDNLITSLREQCYGE--RGGQYRIHVASRQDNRRHRGEFCEA
140 150 160 170 180 190
160 170 180 190 200 210
pF1KE1 CTLGICGQGLKSYMTKPSKSLLPHLKTGNSSPGIGAVYLANQAKNQSDEAKEAKGSGYEK
: :: :::..::
CCDS32 CQEGIVHW-------KPSEKLLEEEATTYTFSRAPSPTKSQDQTGSGWNFCSIPWCLFWA
200 210 220 230 240
>>CCDS42843.1 RTP5 gene_id:285093|Hs108|chr2 (572 aa)
initn: 348 init1: 226 opt: 269 Z-score: 326.6 bits: 69.1 E(32554): 7.2e-12
Smith-Waterman score: 301; 34.6% identity (57.9% similar) in 159 aa overlap (8-162:9-152)
10 20 30 40 50
pF1KE1 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQYQQRAFGWFRCSSCQ
: .:: . : ::. .:.: . .: :: : :: ... ..:. :
CCDS42 MDRAGADMWASTFTLAMAERKPQDVWVLLPEHSLVPGCLDGGGVQYLLVGLSRLQCGHCP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 RSWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWS---QYEMPEFSSDSTMRILS
.: ::.:..: : .:.. . .: :.::..::::. : : . : . . .::
CCDS42 GTWDSAHVHVLFHLWWDRASHRGLVKMRIWGQRCRLCPAPGDCQVRPP-----GEQPFLS
70 80 90 100 110
120 130 140 150 160 170
pF1KE1 NLVQHILKKYYGNGMRKSP-EMPVILEVSLEGSHDTANCEACTLGICGQGLKSYMTKPSK
:: :::. ::.: .: . : . . :: :::: ::.:
CCDS42 RLVLHILQDCYGDG--PGPARHP---REAYEGC-----CEACELGVCFLQKAPDPAWSAN
120 130 140 150 160
180 190 200 210 220 230
pF1KE1 SLLPHLKTGNSSPGIGAVYLANQAKNQSDEAKEAKGSGYEKLGPSRDPDPLNICVFILLL
CCDS42 ATKGNFPATAWGGTGTVSRGKPLSTPGDDLGKGGVVIAIPFSLVGTSNDQVPIAEGPAPP
170 180 190 200 210 220
246 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:35:19 2016 done: Mon Nov 7 01:35:20 2016
Total Scan time: 2.270 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]