Result of FASTA (omim) for
pFN21AE1699
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1699, 232 aa
1>>>pF1KE1699 232 - 232 aa - 232 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2760+/-0.0003; mu= 14.6401+/- 0.019
mean_var=65.2662+/-13.350, 0's: 0 Z-trim(118.3): 6 B-trim: 1369 in 1/53
Lambda= 0.158756
statistics sampled from 31012 (31018) to 31012 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.364), width: 16
Scan time: 6.410
The best scores are: opt bits E(85289)
NP_113628 (OMIM: 607181) receptor-transporting pro ( 232) 1653 386.7 1.8e-107
NP_071430 (OMIM: 609350) receptor-transporting pro ( 246) 578 140.5 2.5e-33
XP_016861790 (OMIM: 609138) PREDICTED: receptor-tr ( 225) 380 95.1 1e-19
NP_001004312 (OMIM: 609138) receptor-transporting ( 225) 380 95.1 1e-19
XP_016861791 (OMIM: 609138) PREDICTED: receptor-tr ( 225) 380 95.1 1e-19
NP_714919 (OMIM: 609137) receptor-transporting pro ( 263) 357 89.9 4.6e-18
>>NP_113628 (OMIM: 607181) receptor-transporting protein (232 aa)
initn: 1653 init1: 1653 opt: 1653 Z-score: 2050.3 bits: 386.7 E(85289): 1.8e-107
Smith-Waterman score: 1653; 100.0% identity (100.0% similar) in 232 aa overlap (1-232:1-232)
10 20 30 40 50 60
pF1KE1 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQYQQWTFARFQCSSCSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQYQQWTFARFQCSSCSR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 NWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNLVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 NWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNLVF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RILKKCYRGRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPSQTPRVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 RILKKCYRGRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPSQTPRVH
130 140 150 160 170 180
190 200 210 220 230
pF1KE1 SIYKVEEVVKPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVVKTAI
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 SIYKVEEVVKPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVVKTAI
190 200 210 220 230
>>NP_071430 (OMIM: 609350) receptor-transporting protein (246 aa)
initn: 603 init1: 550 opt: 578 Z-score: 719.3 bits: 140.5 E(85289): 2.5e-33
Smith-Waterman score: 590; 39.0% identity (66.0% similar) in 241 aa overlap (1-229:1-241)
10 20 30 40 50 60
pF1KE1 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQYQQWTFARFQCSSCSR
:. : .:.: ::::..:.:: :::. : .: . : :: :::: .:. :.::::.:
NP_071 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQYQQRAFGWFRCSSCQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 NWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNLVF
.:::::: .: : : . :.:::.::.: :::.:: .: :::.... :::.:::
NP_071 SWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSNLVQ
70 80 90 100 110 120
130 140 150 160 170
pF1KE1 RILKKCYRGRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPSQT----
.:::: : . . :.:.: ..:::: :.. ::::: :.:. .. ::..
NP_071 HILKKYYGNGTRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSCMTKPSKSLLPH
130 140 150 160 170 180
180 190 200 210 220
pF1KE1 -------PRVHSIYKVEEVVKPWASGENVYSYACQN-HICRNLSIFCCCVILIVIVVIVV
: . ..: .... . : .... . . .. :. . . ::.....: :::
NP_071 LKTGNSSPGIGAVYLANQAKNQSAEAKEAKGSGYEKLGPSRDPDPLNICVFILLLVFIVV
190 200 210 220 230 240
230
pF1KE1 KTAI
:
NP_071 KCFTSE
>>XP_016861790 (OMIM: 609138) PREDICTED: receptor-transp (225 aa)
initn: 387 init1: 216 opt: 380 Z-score: 474.8 bits: 95.1 E(85289): 1e-19
Smith-Waterman score: 380; 37.6% identity (63.7% similar) in 157 aa overlap (8-160:10-161)
10 20 30 40 50
pF1KE1 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQY-QQWTFARFQCSS
::..: : :. .:: : : : .: :. : ::: :: .: . .::.::
XP_016 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 CSRNWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKN
: ..: ::.:..:::: .. . :.:.:::: : : .: ... . .::: .. :
XP_016 CWHTWQSAHVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 LVFRILKKCYR---GRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPS
:. . ..::. :.... .: : ::: .. :::: .:
XP_016 LITSLREQCYEEDGGQYRI--HVASRPD---SGPHRAEFCEACQEGIVHWKPSEKLLEEE
130 140 150 160 170
180 190 200 210 220 230
pF1KE1 QTPRVHSIYKVEEVVKPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVVKTAI
XP_016 VTTYTSEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF
180 190 200 210 220
>>NP_001004312 (OMIM: 609138) receptor-transporting prot (225 aa)
initn: 387 init1: 216 opt: 380 Z-score: 474.8 bits: 95.1 E(85289): 1e-19
Smith-Waterman score: 380; 37.6% identity (63.7% similar) in 157 aa overlap (8-160:10-161)
10 20 30 40 50
pF1KE1 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQY-QQWTFARFQCSS
::..: : :. .:: : : : .: :. : ::: :: .: . .::.::
NP_001 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 CSRNWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKN
: ..: ::.:..:::: .. . :.:.:::: : : .: ... . .::: .. :
NP_001 CWHTWQSAHVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 LVFRILKKCYR---GRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPS
:. . ..::. :.... .: : ::: .. :::: .:
NP_001 LITSLREQCYEEDGGQYRI--HVASRPD---SGPHRAEFCEACQEGIVHWKPSEKLLEEE
130 140 150 160 170
180 190 200 210 220 230
pF1KE1 QTPRVHSIYKVEEVVKPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVVKTAI
NP_001 VTTYTSEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF
180 190 200 210 220
>>XP_016861791 (OMIM: 609138) PREDICTED: receptor-transp (225 aa)
initn: 387 init1: 216 opt: 380 Z-score: 474.8 bits: 95.1 E(85289): 1e-19
Smith-Waterman score: 380; 37.6% identity (63.7% similar) in 157 aa overlap (8-160:10-161)
10 20 30 40 50
pF1KE1 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQY-QQWTFARFQCSS
::..: : :. .:: : : : .: :. : ::: :: .: . .::.::
XP_016 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 CSRNWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKN
: ..: ::.:..:::: .. . :.:.:::: : : .: ... . .::: .. :
XP_016 CWHTWQSAHVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 LVFRILKKCYR---GRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPS
:. . ..::. :.... .: : ::: .. :::: .:
XP_016 LITSLREQCYEEDGGQYRI--HVASRPD---SGPHRAEFCEACQEGIVHWKPSEKLLEEE
130 140 150 160 170
180 190 200 210 220 230
pF1KE1 QTPRVHSIYKVEEVVKPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVVKTAI
XP_016 VTTYTSEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF
180 190 200 210 220
>>NP_714919 (OMIM: 609137) receptor-transporting protein (263 aa)
initn: 369 init1: 208 opt: 357 Z-score: 445.3 bits: 89.9 E(85289): 4.6e-18
Smith-Waterman score: 357; 37.7% identity (61.6% similar) in 159 aa overlap (5-160:43-197)
10 20 30
pF1KE1 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLL
:. ::..: : :.:.:: : : : .:
NP_714 ALHLPSLSVFSLRWKLPSLTTDETMCKSVTTDEWKKVFYEKMEEAKPADSWDLIIDPNLK
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE1 PNVLKPGWMQYQQW-TFARFQCSSCSRNWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRC
:::.::: :: . . .::.:: : ..: : :..:::: .. . :.:.:::: : :
NP_714 HNVLSPGWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQRAGSVRMRVFKQLC
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE1 KKCPQPLFEDPEFTQENISRILKNLVFRILKKCY--RGRFQLIEEVPMIKDISLEGPHNS
.: ... . .::: .. ::. . ..:: :: : .: .: . : .
NP_714 YECGTARLDESSMLEENIEGLVDNLITSLREQCYGERGG-QYRIHVASRQD---NRRHRG
140 150 160 170 180
160 170 180 190 200 210
pF1KE1 DNCEACLQGFCAGPIQVTSLPPSQTPRVHSIYKVEEVVKPWASGENVYSYACQNHICRNL
. :::: .:
NP_714 EFCEACQEGIVHWKPSEKLLEEEATTYTFSRAPSPTKSQDQTGSGWNFCSIPWCLFWATV
190 200 210 220 230 240
232 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 17:51:25 2016 done: Sun Nov 6 17:51:25 2016
Total Scan time: 6.410 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]