FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1699, 232 aa
  1>>>pF1KE1699 232 - 232 aa - 232 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3853+/-0.000631; mu= 14.1346+/- 0.038
 mean_var=64.6535+/-13.043, 0's: 0 Z-trim(111.4): 7  B-trim: 214 in 1/51
 Lambda= 0.159506
 statistics sampled from 12357 (12362) to 12357 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.38), width:  16
 Scan time:  2.240

The best scores are:                                      opt bits E(32554)
CCDS2740.1 RTP3 gene_id:83597|Hs108|chr3           ( 232) 1653 388.3 2.2e-108
CCDS33910.1 RTP4 gene_id:64108|Hs108|chr3          ( 246)  578 141.0 6.8e-34
CCDS33911.1 RTP2 gene_id:344892|Hs108|chr3         ( 225)  380 95.4 3.3e-20
CCDS3287.2 RTP1 gene_id:132112|Hs108|chr3          ( 263)  357 90.1 1.5e-18
CCDS42843.1 RTP5 gene_id:285093|Hs108|chr2         ( 572)  325 82.9 4.7e-16


>>CCDS2740.1 RTP3 gene_id:83597|Hs108|chr3                (232 aa)
 initn: 1653 init1: 1653 opt: 1653  Z-score: 2059.3  bits: 388.3 E(32554): 2.2e-108
Smith-Waterman score: 1653; 100.0% identity (100.0% similar) in 232 aa overlap (1-232:1-232)

               10        20        30        40        50        60
pF1KE1 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQYQQWTFARFQCSSCSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQYQQWTFARFQCSSCSR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNLVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 NWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNLVF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RILKKCYRGRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPSQTPRVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 RILKKCYRGRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPSQTPRVH
              130       140       150       160       170       180

              190       200       210       220       230  
pF1KE1 SIYKVEEVVKPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVVKTAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 SIYKVEEVVKPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVVKTAI
              190       200       210       220       230  

>>CCDS33910.1 RTP4 gene_id:64108|Hs108|chr3               (246 aa)
 initn: 603 init1: 550 opt: 578  Z-score: 721.9  bits: 141.0 E(32554): 6.8e-34
Smith-Waterman score: 590; 39.0% identity (66.0% similar) in 241 aa overlap (1-229:1-241)

               10        20        30        40        50        60
pF1KE1 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQYQQWTFARFQCSSCSR
       :. :  .:.: ::::..:.::   :::. : .:  . :  :: :::: .:. :.::::.:
CCDS33 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQYQQRAFGWFRCSSCQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNLVF
       .:::::: .: :  : .  :.:::.::.: :::.::    .: :::....  :::.::: 
CCDS33 SWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSNLVQ
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE1 RILKKCYRGRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPSQT----
       .:::: : .  .   :.:.: ..:::: :.. :::::  :.:.  ..     ::..    
CCDS33 HILKKYYGNGTRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSCMTKPSKSLLPH
              130       140       150       160       170       180

               180       190       200        210       220        
pF1KE1 -------PRVHSIYKVEEVVKPWASGENVYSYACQN-HICRNLSIFCCCVILIVIVVIVV
              : . ..: .... .  : .... . . ..    :. . .  ::.....: :::
CCDS33 LKTGNSSPGIGAVYLANQAKNQSAEAKEAKGSGYEKLGPSRDPDPLNICVFILLLVFIVV
              190       200       210       220       230       240

      230    
pF1KE1 KTAI  
       :     
CCDS33 KCFTSE
             

>>CCDS33911.1 RTP2 gene_id:344892|Hs108|chr3              (225 aa)
 initn: 387 init1: 216 opt: 380  Z-score: 476.3  bits: 95.4 E(32554): 3.3e-20
Smith-Waterman score: 380; 37.6% identity (63.7% similar) in 157 aa overlap (8-160:10-161)

                 10        20        30        40         50       
pF1KE1   MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQY-QQWTFARFQCSS
                ::..: : :. .::   : :  : .: :. : ::: :: .: . .::.:: 
CCDS33 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KE1 CSRNWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKN
       : ..: ::.:..::::  .. .  :.:.:::: : : .:    ...  . .:::  .. :
CCDS33 CWHTWQSAHVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN
               70        80        90       100       110       120

       120          130       140       150       160       170    
pF1KE1 LVFRILKKCYR---GRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPS
       :.  . ..::.   :....  .:    :    ::: .. :::: .:              
CCDS33 LITSLREQCYEEDGGQYRI--HVASRPD---SGPHRAEFCEACQEGIVHWKPSEKLLEEE
              130         140          150       160       170     

          180       190       200       210       220       230  
pF1KE1 QTPRVHSIYKVEEVVKPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVVKTAI
                                                                 
CCDS33 VTTYTSEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF        
         180       190       200       210       220             

>>CCDS3287.2 RTP1 gene_id:132112|Hs108|chr3               (263 aa)
 initn: 369 init1: 208 opt: 357  Z-score: 446.6  bits: 90.1 E(32554): 1.5e-18
Smith-Waterman score: 357; 37.7% identity (61.6% similar) in 159 aa overlap (5-160:43-197)

                                         10        20        30    
pF1KE1                           MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLL
                                     :. ::..: : :.:.::   : :  : .: 
CCDS32 ALHLPSLSVFSLRWKLPSLTTDETMCKSVTTDEWKKVFYEKMEEAKPADSWDLIIDPNLK
             20        30        40        50        60        70  

           40         50        60        70        80        90   
pF1KE1 PNVLKPGWMQYQQW-TFARFQCSSCSRNWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRC
        :::.::: :: .  . .::.:: : ..: :  :..::::  .. .  :.:.:::: : :
CCDS32 HNVLSPGWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQRAGSVRMRVFKQLC
             80        90       100       110       120       130  

           100       110       120         130       140       150 
pF1KE1 KKCPQPLFEDPEFTQENISRILKNLVFRILKKCY--RGRFQLIEEVPMIKDISLEGPHNS
        .:    ...  . .:::  .. ::.  . ..::  ::  :   .:   .:   .  : .
CCDS32 YECGTARLDESSMLEENIEGLVDNLITSLREQCYGERGG-QYRIHVASRQD---NRRHRG
            140       150       160       170        180           

             160       170       180       190       200       210 
pF1KE1 DNCEACLQGFCAGPIQVTSLPPSQTPRVHSIYKVEEVVKPWASGENVYSYACQNHICRNL
       . :::: .:                                                   
CCDS32 EFCEACQEGIVHWKPSEKLLEEEATTYTFSRAPSPTKSQDQTGSGWNFCSIPWCLFWATV
      190       200       210       220       230       240        

>>CCDS42843.1 RTP5 gene_id:285093|Hs108|chr2              (572 aa)
 initn: 351 init1: 273 opt: 325  Z-score: 401.6  bits: 82.9 E(32554): 4.7e-16
Smith-Waterman score: 335; 37.3% identity (59.6% similar) in 161 aa overlap (2-162:4-152)

                 10        20        30        40        50        
pF1KE1   MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQYQQWTFARFQCSSC
          :: ...: . :   : : ::   :.: :...:.:. :  : .::    ..:.::. :
CCDS42 MDRAG-ADMWASTFTLAMAERKPQDVWVLLPEHSLVPGCLDGGGVQYLLVGLSRLQCGHC
                10        20        30        40        50         

       60        70        80        90       100       110        
pF1KE1 SRNWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNL
         .: ::.: ::::. :.. . :: ::::.. :::. :: :   : .    . . .:. :
CCDS42 PGTWDSAHVHVLFHLWWDRASHRGLVKMRIWGQRCRLCPAP--GDCQVRPPGEQPFLSRL
      60        70        80        90       100         110       

      120       130       140       150       160       170        
pF1KE1 VFRILKKCYRGRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPSQTPR
       :..::. :: :      . :  .. . ::      ::::  : :                
CCDS42 VLHILQDCY-GDGPGPARHP--RE-AYEG-----CCEACELGVCFLQKAPDPAWSANATK
       120        130          140            150       160        

      180       190       200       210       220       230        
pF1KE1 VHSIYKVEEVVKPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVVKTAI      
                                                                   
CCDS42 GNFPATAWGGTGTVSRGKPLSTPGDDLGKGGVVIAIPFSLVGTSNDQVPIAEGPAPPAGA
      170       180       190       200       210       220        




232 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:51:24 2016 done: Sun Nov  6 17:51:24 2016
 Total Scan time:  2.240 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]