Result of FASTA (omim) for
pFN21AE1698
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1698, 225 aa
1>>>pF1KE1698 225 - 225 aa - 225 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4798+/-0.000324; mu= 13.2479+/- 0.020
mean_var=69.5551+/-14.162, 0's: 0 Z-trim(116.9): 8 B-trim: 0 in 0/52
Lambda= 0.153784
statistics sampled from 28412 (28420) to 28412 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.333), width: 16
Scan time: 6.490
The best scores are: opt bits E(85289)
XP_016861790 (OMIM: 609138) PREDICTED: receptor-tr ( 225) 1590 361.3 7.6e-100
XP_016861791 (OMIM: 609138) PREDICTED: receptor-tr ( 225) 1590 361.3 7.6e-100
NP_001004312 (OMIM: 609138) receptor-transporting ( 225) 1590 361.3 7.6e-100
NP_714919 (OMIM: 609137) receptor-transporting pro ( 263) 1278 292.1 5.9e-79
NP_113628 (OMIM: 607181) receptor-transporting pro ( 232) 381 93.1 4.3e-19
NP_071430 (OMIM: 609350) receptor-transporting pro ( 246) 319 79.3 6.3e-15
>>XP_016861790 (OMIM: 609138) PREDICTED: receptor-transp (225 aa)
initn: 1590 init1: 1590 opt: 1590 Z-score: 1913.6 bits: 361.3 E(85289): 7.6e-100
Smith-Waterman score: 1590; 99.6% identity (100.0% similar) in 225 aa overlap (1-225:1-225)
10 20 30 40 50 60
pF1KE1 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 CWHTWQSAHVVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN
:::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
XP_016 CWHTWQSAHVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LITSLREQCYEEDGGQYRIHVASRPDSGPHRAEFCEACQEGIVHWKPSEKLLEEEVTTYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LITSLREQCYEEDGGQYRIHVASRPDSGPHRAEFCEACQEGIVHWKPSEKLLEEEVTTYT
130 140 150 160 170 180
190 200 210 220
pF1KE1 SEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF
:::::::::::::::::::::::::::::::::::::::::::::
XP_016 SEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF
190 200 210 220
>>XP_016861791 (OMIM: 609138) PREDICTED: receptor-transp (225 aa)
initn: 1590 init1: 1590 opt: 1590 Z-score: 1913.6 bits: 361.3 E(85289): 7.6e-100
Smith-Waterman score: 1590; 99.6% identity (100.0% similar) in 225 aa overlap (1-225:1-225)
10 20 30 40 50 60
pF1KE1 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 CWHTWQSAHVVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN
:::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
XP_016 CWHTWQSAHVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LITSLREQCYEEDGGQYRIHVASRPDSGPHRAEFCEACQEGIVHWKPSEKLLEEEVTTYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LITSLREQCYEEDGGQYRIHVASRPDSGPHRAEFCEACQEGIVHWKPSEKLLEEEVTTYT
130 140 150 160 170 180
190 200 210 220
pF1KE1 SEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF
:::::::::::::::::::::::::::::::::::::::::::::
XP_016 SEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF
190 200 210 220
>>NP_001004312 (OMIM: 609138) receptor-transporting prot (225 aa)
initn: 1590 init1: 1590 opt: 1590 Z-score: 1913.6 bits: 361.3 E(85289): 7.6e-100
Smith-Waterman score: 1590; 99.6% identity (100.0% similar) in 225 aa overlap (1-225:1-225)
10 20 30 40 50 60
pF1KE1 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 CWHTWQSAHVVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN
:::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
NP_001 CWHTWQSAHVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LITSLREQCYEEDGGQYRIHVASRPDSGPHRAEFCEACQEGIVHWKPSEKLLEEEVTTYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LITSLREQCYEEDGGQYRIHVASRPDSGPHRAEFCEACQEGIVHWKPSEKLLEEEVTTYT
130 140 150 160 170 180
190 200 210 220
pF1KE1 SEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF
190 200 210 220
>>NP_714919 (OMIM: 609137) receptor-transporting protein (263 aa)
initn: 1267 init1: 1118 opt: 1278 Z-score: 1538.5 bits: 292.1 E(85289): 5.9e-79
Smith-Waterman score: 1278; 81.8% identity (90.2% similar) in 225 aa overlap (1-221:37-261)
10 20 30
pF1KE1 MCTSLTTCEWKKVFYEKMEVAKPADSWELI
:: :.:: ::::::::::: :::::::.::
NP_714 WRLRCPALHLPSLSVFSLRWKLPSLTTDETMCKSVTTDEWKKVFYEKMEEAKPADSWDLI
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE1 IDPNLKPSELAPGWKQYLEQHASGRFHCSWCWHTWQSAHVVILFHMFLDRARRAGSVRMR
:::::: . :.:::::::: ::::::::::::::::: .::::::::::::.::::::::
NP_714 IDPNLKHNVLSPGWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQRAGSVRMR
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE1 VFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQCYEEDGGQYRIHVASRPDSGPH
:::::::::::::::::::::::::::::::::::::::: : ::::::::::: :. :
NP_714 VFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQCYGERGGQYRIHVASRQDNRRH
130 140 150 160 170 180
160 170 180 190 200
pF1KE1 RAEFCEACQEGIVHWKPSEKLLEEEVTTYT-SEASKP---RAQAGSGYNFLSLRWCLFWA
:.:::::::::::::::::::::::.:::: :.: .: . :.:::.:: :. ::::::
NP_714 RGEFCEACQEGIVHWKPSEKLLEEEATTYTFSRAPSPTKSQDQTGSGWNFCSIPWCLFWA
190 200 210 220 230 240
210 220
pF1KE1 SLCLLVVYLQFSFLSPAFF
.. ::..:::::: :
NP_714 TVLLLIIYLQFSFRSSV
250 260
>>NP_113628 (OMIM: 607181) receptor-transporting protein (232 aa)
initn: 388 init1: 217 opt: 381 Z-score: 463.7 bits: 93.1 E(85289): 4.3e-19
Smith-Waterman score: 381; 37.6% identity (63.7% similar) in 157 aa overlap (10-161:8-160)
10 20 30 40 50 60
pF1KE1 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW
::..: : :. .:: : : : .: :. : ::: :: .: . .::.::
NP_113 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQY-QQWTFARFQCSS
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 CWHTWQSAHVVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN
: ..: ::.:..:::: .. . :.:.:::: : : .: ... . .::: .. :
NP_113 CSRNWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKN
60 70 80 90 100 110
130 140 150 160 170
pF1KE1 LITSLREQCYEEDGGQYRI--HVASRPD---SGPHRAEFCEACQEGIVHWKPSEKLLEEE
:. . ..::. :.... .: : ::: .. :::: .:
NP_113 LVFRILKKCYR---GRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPS
120 130 140 150 160 170
180 190 200 210 220
pF1KE1 VTTYTSEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF
NP_113 QTPRVHSIYKVEEVVKPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVVKTAI
180 190 200 210 220 230
>>NP_071430 (OMIM: 609350) receptor-transporting protein (246 aa)
initn: 329 init1: 154 opt: 319 Z-score: 389.0 bits: 79.3 E(85289): 6.3e-15
Smith-Waterman score: 331; 31.5% identity (54.0% similar) in 235 aa overlap (10-213:8-240)
10 20 30 40 50 60
pF1KE1 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW
:...: : .. ::: .: : .: ::. . :: ::::: .:.: : :.::
NP_071 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQY-QQRAFGWFRCSS
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 CWHTWQSAHVVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN
: ..: ::.: :: : . .. :.::::.: : : .:. .. . . .. ...:
NP_071 CQRSWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSN
60 70 80 90 100 110
130 140 150 160 170
pF1KE1 LITSLREQCYEEDGGQYRIH---VASRPDSGPHRAEFCEACQEGIVHW-------KPSEK
:. . .. : .: . . . : : . :::: :: :::..
NP_071 LVQHILKK-YYGNGTRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSCMTKPSKS
120 130 140 150 160 170
180 190 200
pF1KE1 LLEEEVTTYTS----------EASKPRAQA----GSGYNFLS-------LRWCLFWASLC
:: . : .: .:.. :.: ::::. :. : :.: :
NP_071 LLPHLKTGNSSPGIGAVYLANQAKNQSAEAKEAKGSGYEKLGPSRDPDPLNICVFILLLV
180 190 200 210 220 230
210 220
pF1KE1 LLVVYLQFSFLSPAFF
..::
NP_071 FIVVKCFTSE
240
225 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 11:58:11 2016 done: Sun Nov 6 11:58:12 2016
Total Scan time: 6.490 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]