FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1698, 225 aa
  1>>>pF1KE1698 225 - 225 aa - 225 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7783+/-0.000692; mu= 11.5445+/- 0.042
 mean_var=67.5166+/-13.615, 0's: 0 Z-trim(110.2): 8  B-trim: 0 in 0/51
 Lambda= 0.156088
 statistics sampled from 11404 (11410) to 11404 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.35), width:  16
 Scan time:  2.250

The best scores are:                                      opt bits E(32554)
CCDS33911.1 RTP2 gene_id:344892|Hs108|chr3         ( 225) 1590 366.4 8.5e-102
CCDS3287.2 RTP1 gene_id:132112|Hs108|chr3          ( 263) 1278 296.1 1.4e-80
CCDS2740.1 RTP3 gene_id:83597|Hs108|chr3           ( 232)  381 94.1 7.9e-20
CCDS33910.1 RTP4 gene_id:64108|Hs108|chr3          ( 246)  319 80.2 1.3e-15
CCDS42843.1 RTP5 gene_id:285093|Hs108|chr2         ( 572)  252 65.2 9.9e-11


>>CCDS33911.1 RTP2 gene_id:344892|Hs108|chr3              (225 aa)
 initn: 1590 init1: 1590 opt: 1590  Z-score: 1941.1  bits: 366.4 E(32554): 8.5e-102
Smith-Waterman score: 1590; 99.6% identity (100.0% similar) in 225 aa overlap (1-225:1-225)

               10        20        30        40        50        60
pF1KE1 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 CWHTWQSAHVVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN
       :::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
CCDS33 CWHTWQSAHVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LITSLREQCYEEDGGQYRIHVASRPDSGPHRAEFCEACQEGIVHWKPSEKLLEEEVTTYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LITSLREQCYEEDGGQYRIHVASRPDSGPHRAEFCEACQEGIVHWKPSEKLLEEEVTTYT
              130       140       150       160       170       180

              190       200       210       220     
pF1KE1 SEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF
              190       200       210       220     

>>CCDS3287.2 RTP1 gene_id:132112|Hs108|chr3               (263 aa)
 initn: 1267 init1: 1118 opt: 1278  Z-score: 1560.3  bits: 296.1 E(32554): 1.4e-80
Smith-Waterman score: 1278; 81.8% identity (90.2% similar) in 225 aa overlap (1-221:37-261)

                                             10        20        30
pF1KE1                               MCTSLTTCEWKKVFYEKMEVAKPADSWELI
                                     :: :.:: ::::::::::: :::::::.::
CCDS32 WRLRCPALHLPSLSVFSLRWKLPSLTTDETMCKSVTTDEWKKVFYEKMEEAKPADSWDLI
         10        20        30        40        50        60      

               40        50        60        70        80        90
pF1KE1 IDPNLKPSELAPGWKQYLEQHASGRFHCSWCWHTWQSAHVVILFHMFLDRARRAGSVRMR
       :::::: . :.:::::::: ::::::::::::::::: .::::::::::::.::::::::
CCDS32 IDPNLKHNVLSPGWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQRAGSVRMR
         70        80        90       100       110       120      

              100       110       120       130       140       150
pF1KE1 VFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQCYEEDGGQYRIHVASRPDSGPH
       :::::::::::::::::::::::::::::::::::::::: : ::::::::::: :.  :
CCDS32 VFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQCYGERGGQYRIHVASRQDNRRH
        130       140       150       160       170       180      

              160       170       180           190       200      
pF1KE1 RAEFCEACQEGIVHWKPSEKLLEEEVTTYT-SEASKP---RAQAGSGYNFLSLRWCLFWA
       :.:::::::::::::::::::::::.:::: :.: .:   . :.:::.:: :. ::::::
CCDS32 RGEFCEACQEGIVHWKPSEKLLEEEATTYTFSRAPSPTKSQDQTGSGWNFCSIPWCLFWA
        190       200       210       220       230       240      

        210       220     
pF1KE1 SLCLLVVYLQFSFLSPAFF
       .. ::..:::::: :    
CCDS32 TVLLLIIYLQFSFRSSV  
        250       260     

>>CCDS2740.1 RTP3 gene_id:83597|Hs108|chr3                (232 aa)
 initn: 388 init1: 217 opt: 381  Z-score: 469.5  bits: 94.1 E(32554): 7.9e-20
Smith-Waterman score: 381; 37.6% identity (63.7% similar) in 157 aa overlap (10-161:8-160)

               10        20        30        40        50        60
pF1KE1 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW
                ::..: : :. .::   : :  : .: :. : ::: :: .: . .::.:: 
CCDS27   MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQY-QQWTFARFQCSS
                 10        20        30        40         50       

               70        80        90       100       110       120
pF1KE1 CWHTWQSAHVVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN
       : ..: ::.:..::::  .. .  :.:.:::: : : .:    ...  . .:::  .. :
CCDS27 CSRNWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKN
        60        70        80        90       100       110       

              130         140          150       160       170     
pF1KE1 LITSLREQCYEEDGGQYRI--HVASRPD---SGPHRAEFCEACQEGIVHWKPSEKLLEEE
       :.  . ..::.   :....  .:    :    ::: .. :::: .:              
CCDS27 LVFRILKKCYR---GRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPS
       120          130       140       150       160       170    

         180       190       200       210       220             
pF1KE1 VTTYTSEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF        
                                                                 
CCDS27 QTPRVHSIYKVEEVVKPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVVKTAI
          180       190       200       210       220       230  

>>CCDS33910.1 RTP4 gene_id:64108|Hs108|chr3               (246 aa)
 initn: 329 init1: 154 opt: 319  Z-score: 393.6  bits: 80.2 E(32554): 1.3e-15
Smith-Waterman score: 331; 31.5% identity (54.0% similar) in 235 aa overlap (10-213:8-240)

               10        20        30        40        50        60
pF1KE1 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW
                :...: : .. :::  .: : .: ::. . :: ::::: .:.: : :.:: 
CCDS33   MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQY-QQRAFGWFRCSS
                 10        20        30        40         50       

               70        80        90       100       110       120
pF1KE1 CWHTWQSAHVVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN
       : ..: ::.: :: : . ..    :.::::.: : : .:. .. .   .  ..   ...:
CCDS33 CQRSWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSN
        60        70        80        90       100       110       

              130       140          150       160              170
pF1KE1 LITSLREQCYEEDGGQYRIH---VASRPDSGPHRAEFCEACQEGIVHW-------KPSEK
       :.  . .. :  .: .   .   .      : : .  ::::  ::          :::..
CCDS33 LVQHILKK-YYGNGTRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSCMTKPSKS
       120        130       140       150       160       170      

              180                 190                  200         
pF1KE1 LLEEEVTTYTS----------EASKPRAQA----GSGYNFLS-------LRWCLFWASLC
       :: .  :  .:          .:..  :.:    ::::. :.       :  :.:   : 
CCDS33 LLPHLKTGNSSPGIGAVYLANQAKNQSAEAKEAKGSGYEKLGPSRDPDPLNICVFILLLV
        180       190       200       210       220       230      

     210       220     
pF1KE1 LLVVYLQFSFLSPAFF
       ..::            
CCDS33 FIVVKCFTSE      
        240            

>>CCDS42843.1 RTP5 gene_id:285093|Hs108|chr2              (572 aa)
 initn: 233 init1: 143 opt: 252  Z-score: 306.2  bits: 65.2 E(32554): 9.9e-11
Smith-Waterman score: 270; 32.3% identity (54.8% similar) in 155 aa overlap (10-162:9-151)

               10        20        30        40        50        60
pF1KE1 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW
                : ..:   :   :: : : :. . .: :. :  :  :::    : :..:. 
CCDS42  MDRAGADMWASTFTLAMAERKPQDVWVLLPEHSLVPGCLDGGGVQYLLVGLS-RLQCGH
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KE1 CWHTWQSAHVVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN
       :  ::.:::: .:::.. ::: . : :.::.. : :  : .    . ..   . . ... 
CCDS42 CPGTWDSAHVHVLFHLWWDRASHRGLVKMRIWGQRCRLCPAP--GDCQVRPPGEQPFLSR
       60        70        80        90       100         110      

              130       140       150         160       170        
pF1KE1 LITSLREQCYEEDGGQYRIHVASRPDSGPHRAE--FCEACQEGIVHWKPSEKLLEEEVTT
       :.  . ..:: .  :         :   :..:    ::::. :.                
CCDS42 LVLHILQDCYGDGPG---------PARHPREAYEGCCEACELGVCFLQKAPDPAWSANAT
        120       130                140       150       160       

      180       190       200       210       220                  
pF1KE1 YTSEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF             
                                                                   
CCDS42 KGNFPATAWGGTGTVSRGKPLSTPGDDLGKGGVVIAIPFSLVGTSNDQVPIAEGPAPPAG
       170       180       190       200       210       220       




225 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 11:58:10 2016 done: Sun Nov  6 11:58:10 2016
 Total Scan time:  2.250 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]