FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1697, 263 aa
  1>>>pF1KE1697 263 - 263 aa - 263 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6245+/-0.000669; mu= 13.2009+/- 0.040
 mean_var=64.6368+/-12.993, 0's: 0 Z-trim(109.7): 11  B-trim: 0 in 0/54
 Lambda= 0.159527
 statistics sampled from 11051 (11058) to 11051 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.34), width:  16
 Scan time:  2.400

The best scores are:                                      opt bits E(32554)
CCDS3287.2 RTP1 gene_id:132112|Hs108|chr3          ( 263) 1875 439.7 9.5e-124
CCDS33911.1 RTP2 gene_id:344892|Hs108|chr3         ( 225) 1284 303.7 7.2e-83
CCDS2740.1 RTP3 gene_id:83597|Hs108|chr3           ( 232)  357 90.4 1.2e-18
CCDS33910.1 RTP4 gene_id:64108|Hs108|chr3          ( 246)  315 80.7 1.1e-15
CCDS42843.1 RTP5 gene_id:285093|Hs108|chr2         ( 572)  266 69.6 5.7e-12


>>CCDS3287.2 RTP1 gene_id:132112|Hs108|chr3               (263 aa)
 initn: 1875 init1: 1875 opt: 1875  Z-score: 2335.2  bits: 439.7 E(32554): 9.5e-124
Smith-Waterman score: 1875; 100.0% identity (100.0% similar) in 263 aa overlap (1-263:1-263)

               10        20        30        40        50        60
pF1KE1 MRIFRPWRLRCPALHLPSLSVFSLRWKLPSLTTDETMCKSVTTDEWKKVFYEKMEEAKPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MRIFRPWRLRCPALHLPSLSVFSLRWKLPSLTTDETMCKSVTTDEWKKVFYEKMEEAKPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DSWDLIIDPNLKHNVLSPGWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DSWDLIIDPNLKHNVLSPGWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQRA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQCYGERGGQYRIHVASR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQCYGERGGQYRIHVASR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QDNRRHRGEFCEACQEGIVHWKPSEKLLEEEATTYTFSRAPSPTKSQDQTGSGWNFCSIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QDNRRHRGEFCEACQEGIVHWKPSEKLLEEEATTYTFSRAPSPTKSQDQTGSGWNFCSIP
              190       200       210       220       230       240

              250       260   
pF1KE1 WCLFWATVLLLIIYLQFSFRSSV
       :::::::::::::::::::::::
CCDS32 WCLFWATVLLLIIYLQFSFRSSV
              250       260   

>>CCDS33911.1 RTP2 gene_id:344892|Hs108|chr3              (225 aa)
 initn: 1273 init1: 1124 opt: 1284  Z-score: 1601.2  bits: 303.7 E(32554): 7.2e-83
Smith-Waterman score: 1284; 82.2% identity (90.2% similar) in 225 aa overlap (37-261:1-221)

         10        20        30        40        50        60      
pF1KE1 WRLRCPALHLPSLSVFSLRWKLPSLTTDETMCKSVTTDEWKKVFYEKMEEAKPADSWDLI
                                     :: :.:: ::::::::::: :::::::.::
CCDS33                               MCTSLTTCEWKKVFYEKMEVAKPADSWELI
                                             10        20        30

         70        80        90       100       110       120      
pF1KE1 IDPNLKHNVLSPGWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQRAGSVRMR
       :::::: . :.:::::::: ::::::::::::::::: .:::::::::::::::::::::
CCDS33 IDPNLKPSELAPGWKQYLEQHASGRFHCSWCWHTWQSAHVVILFHMFLDRAQRAGSVRMR
               40        50        60        70        80        90

        130       140       150       160       170       180      
pF1KE1 VFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQCYGERGGQYRIHVASRQDNRRH
       :::::::::::::::::::::::::::::::::::::::: : ::::::::::: :.  :
CCDS33 VFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQCYEEDGGQYRIHVASRPDSGPH
              100       110       120       130       140       150

        190       200       210       220       230       240      
pF1KE1 RGEFCEACQEGIVHWKPSEKLLEEEATTYTFSRAPSPTKSQDQTGSGWNFCSIPWCLFWA
       :.:::::::::::::::::::::::.:::: :.: .:   . :.:::.:: :. ::::::
CCDS33 RAEFCEACQEGIVHWKPSEKLLEEEVTTYT-SEASKP---RAQAGSGYNFLSLRWCLFWA
              160       170       180           190       200      

        250       260     
pF1KE1 TVLLLIIYLQFSFRSSV  
       .. ::..:::::: :    
CCDS33 SLCLLVVYLQFSFLSPAFF
        210       220     

>>CCDS2740.1 RTP3 gene_id:83597|Hs108|chr3                (232 aa)
 initn: 369 init1: 208 opt: 357  Z-score: 447.9  bits: 90.4 E(32554): 1.2e-18
Smith-Waterman score: 357; 37.7% identity (61.6% similar) in 159 aa overlap (43-197:5-160)

             20        30        40        50        60        70  
pF1KE1 ALHLPSLSVFSLRWKLPSLTTDETMCKSVTTDEWKKVFYEKMEEAKPADSWDLIIDPNLK
                                     :. ::..: : :.:.::   : :  : .: 
CCDS27                           MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLL
                                         10        20        30    

             80        90       100       110       120       130  
pF1KE1 HNVLSPGWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQRAGSVRMRVFKQLC
        :::.::: :: .  . .::.:: : ..: :  :..::::  .. .  :.:.:::: : :
CCDS27 PNVLKPGWMQYQQW-TFARFQCSSCSRNWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRC
           40         50        60        70        80        90   

            140       150       160       170        180           
pF1KE1 YECGTARLDESSMLEENIEGLVDNLITSLREQCYGERGG-QYRIHVASRQD---NRRHRG
        .:    ...  . .:::  .. ::.  . ..::  ::  :   .:   .:   .  : .
CCDS27 KKCPQPLFEDPEFTQENISRILKNLVFRILKKCY--RGRFQLIEEVPMIKDISLEGPHNS
           100       110       120         130       140       150 

      190       200       210       220       230       240        
pF1KE1 EFCEACQEGIVHWKPSEKLLEEEATTYTFSRAPSPTKSQDQTGSGWNFCSIPWCLFWATV
       . :::: .:                                                   
CCDS27 DNCEACLQGFCAGPIQVTSLPPSQTPRVHSIYKVEEVVKPWASGENVYSYACQNHICRNL
             160       170       180       190       200       210 

>>CCDS33910.1 RTP4 gene_id:64108|Hs108|chr3               (246 aa)
 initn: 347 init1: 169 opt: 315  Z-score: 395.3  bits: 80.7 E(32554): 1.1e-15
Smith-Waterman score: 319; 32.6% identity (57.0% similar) in 172 aa overlap (46-208:8-178)

          20        30        40        50        60        70     
pF1KE1 LPSLSVFSLRWKLPSLTTDETMCKSVTTDEWKKVFYEKMEEAKPADSWDLIIDPNLKHNV
                                     :...: : ..::::  .: : .: ::. . 
CCDS33                        MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDC
                                      10        20        30       

          80        90       100       110       120       130     
pF1KE1 LSPGWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQRAGSVRMRVFKQLCYEC
       :. ::::: . .: : :.:: : ..: :  : :: : . ..    :.::::.: : : .:
CCDS33 LAQGWKQYQQ-RAFGWFRCSSCQRSWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKC
        40         50        60        70        80        90      

         140       150       160         170       180       190   
pF1KE1 GTARLDESSMLEENIEGLVDNLITSLREQCYGE--RGGQYRIHVASRQDNRRHRGEFCEA
       . .. .   .  ..   ...::.  . .. ::.  : .     .   . .  :    :::
CCDS33 SWSQYEMPEFSSDSTMRILSNLVQHILKKYYGNGTRKSPEMPVILEVSLEGSHDTANCEA
        100       110       120       130       140       150      

           200              210       220       230       240      
pF1KE1 CQEGIVHW-------KPSEKLLEEEATTYTFSRAPSPTKSQDQTGSGWNFCSIPWCLFWA
       :  ::          :::..::                                      
CCDS33 CTLGICGQGLKSCMTKPSKSLLPHLKTGNSSPGIGAVYLANQAKNQSAEAKEAKGSGYEK
        160       170       180       190       200       210      

>>CCDS42843.1 RTP5 gene_id:285093|Hs108|chr2              (572 aa)
 initn: 164 init1: 130 opt: 266  Z-score: 328.4  bits: 69.6 E(32554): 5.7e-12
Smith-Waterman score: 291; 28.8% identity (53.8% similar) in 212 aa overlap (44-243:7-208)

            20        30        40        50        60        70   
pF1KE1 LHLPSLSVFSLRWKLPSLTTDETMCKSVTTDEWKKVFYEKMEEAKPADSWDLIIDPNLKH
                                     : : ..:   : : :: : : :. . .:  
CCDS42                         MDRAGADMWASTFTLAMAERKPQDVWVLLPEHSLVP
                                       10        20        30      

            80        90       100       110       120       130   
pF1KE1 NVLSPGWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQRAGSVRMRVFKQLCY
       . :. :  ::: .  : :..:. :  ::.: .: .:::.. :::.. : :.::.. : : 
CCDS42 GCLDGGGVQYLLVGLS-RLQCGHCPGTWDSAHVHVLFHLWWDRASHRGLVKMRIWGQRCR
         40        50         60        70        80        90     

           140       150       160       170       180       190   
pF1KE1 ECGTARLDESSMLEENIEGLVDNLITSLREQCYGERGGQYRIHVASRQDNRRHRGEFCEA
        : .    . ..   . . ... :.  . ..:::.  :       .:.  . ..:  :::
CCDS42 LCPAP--GDCQVRPPGEQPFLSRLVLHILQDCYGDGPGP------ARHPREAYEG-CCEA
         100         110       120       130             140       

           200               210           220       230       240 
pF1KE1 CQEGIVH--------WKPSEKLLEEEATTY----TFSRAPSPTKSQDQTGSGWNFCSIPW
       :. :.          :. .    .  ::..    : ::.   .   :. :.:    .::.
CCDS42 CELGVCFLQKAPDPAWSANATKGNFPATAWGGTGTVSRGKPLSTPGDDLGKGGVVIAIPF
        150       160       170       180       190       200      

             250       260                                         
pF1KE1 CLFWATVLLLIIYLQFSFRSSV                                      
        :                                                          
CCDS42 SLVGTSNDQVPIAEGPAPPAGASLPVTGSCEALVIGQGSIFLSGDSVAMPGGKGFPVAIG
        210       220       230       240       250       260      




263 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 20:33:34 2016 done: Sun Nov  6 20:33:35 2016
 Total Scan time:  2.400 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]