FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1695, 202 aa
  1>>>pF1KE1695 202 - 202 aa - 202 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2283+/-0.000307; mu= 14.1414+/- 0.019
 mean_var=63.4154+/-12.932, 0's: 0 Z-trim(116.7): 16  B-trim: 1688 in 1/54
 Lambda= 0.161056
 statistics sampled from 28069 (28085) to 28069 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.329), width:  16
 Scan time:  6.270

The best scores are:                                      opt bits E(85289)
NP_000597 (OMIM: 120930) complement component C8 g ( 202) 1327 316.4   2e-86
NP_001624 (OMIM: 176870) protein AMBP preproprotei ( 352)  227 60.9 2.8e-09
NP_000945 (OMIM: 176803) prostaglandin-H2 D-isomer ( 190)  166 46.6 3.1e-05
NP_005555 (OMIM: 600181) neutrophil gelatinase-ass ( 198)  145 41.7 0.00095


>>NP_000597 (OMIM: 120930) complement component C8 gamma  (202 aa)
 initn: 1327 init1: 1327 opt: 1327  Z-score: 1672.4  bits: 316.4 E(85289): 2e-86
Smith-Waterman score: 1327; 99.5% identity (99.5% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KE1 MLPPGTATLLTLLLAAGSLGQKPQRPRRPASPISTIQPKANFDAQQFAGTWLLVAVGSAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MLPPGTATLLTLLLAAGSLGQKPQRPRRPASPISTIQPKANFDAQQFAGTWLLVAVGSAC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RFLQEQGHRAEATTLHVAPQGTAMAVSTFRKLDGICWQVRQLYGDTGVLGRFLLQARGAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
NP_000 RFLQEQGHRAEATTLHVAPQGTAMAVSTFRKLDGICWQVRQLYGDTGVLGRFLLQARDAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GAVHVVVAETDYQSFAVLYLERAGQLSVKLYARSLPVSDSVLSGFEQRVQEAHLTEDQIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GAVHVVVAETDYQSFAVLYLERAGQLSVKLYARSLPVSDSVLSGFEQRVQEAHLTEDQIF
              130       140       150       160       170       180

              190       200  
pF1KE1 YFPKYGFCEAADQFHVLDEVRR
       ::::::::::::::::::::::
NP_000 YFPKYGFCEAADQFHVLDEVRR
              190       200  

>>NP_001624 (OMIM: 176870) protein AMBP preproprotein [H  (352 aa)
 initn: 156 init1: 103 opt: 227  Z-score: 287.5  bits: 60.9 E(85289): 2.8e-09
Smith-Waterman score: 227; 26.0% identity (58.3% similar) in 192 aa overlap (9-193:7-193)

               10        20        30        40        50        60
pF1KE1 MLPPGTATLLTLLLAAGSLGQKPQRPRRPASPISTIQPKANFDAQQFAGTWLLVAVGSAC
               :: :: :  ...  :  :    .: ..:: . ::. ... : :  .:.::.:
NP_001   MRSLGALLLLLSACLAVSAGPV-P----TPPDNIQVQENFNISRIYGKWYNLAIGSTC
                 10        20             30        40        50   

               70        80          90       100       110        
pF1KE1 RFLQEQGHRAEATTLHVAPQGTAMAVS--TFRKLDGICWQVRQLYGDTGVLGRFLLQARG
        .:..   :  ..:: ..  .:   .:  . :   :.: ..   :  : . :.:: .   
NP_001 PWLKKIMDRMTVSTLVLGEGATEAEISMTSTRWRKGVCEETSGAYEKTDTDGKFLYHKSK
            60        70        80        90       100       110   

      120       130       140            150       160       170   
pF1KE1 ARGAVHVVVAETDYQSFAVLYLERAGQ-----LSVKLYARSLPVSDSVLSGFEQRVQEAH
          ...  :..:.:. .:..  .. ..     ...:::.:.  . ...:. :.  .: . 
NP_001 WNITMESYVVHTNYDEYAIFLTKKFSRHHGPTITAKLYGRAPQLRETLLQDFRVVAQGVG
           120       130       140       150       160       170   

           180       190       200                                 
pF1KE1 LTEDQIFYFPKYGFCEAADQFHVLDEVRR                               
       . ::.:: .   : :  ..:                                        
NP_001 IPEDSIFTMADRGECVPGEQEPEPILIPRVRRAVLPQEEEGSGGGQLVTEVTKKEDSCQL
           180       190       200       210       220       230   

>>NP_000945 (OMIM: 176803) prostaglandin-H2 D-isomerase   (190 aa)
 initn:  66 init1:  66 opt: 166  Z-score: 214.9  bits: 46.6 E(85289): 3.1e-05
Smith-Waterman score: 166; 26.5% identity (50.8% similar) in 189 aa overlap (7-188:2-186)

               10        20        30        40        50        60
pF1KE1 MLPPGTATLLTLLLAAGSLGQKPQRPRRPASPISTIQPKANFDAQQFAGTWLLVAVGSAC
             ::  :: .. . ::   .    : . .: .::  ::. ..: : :. ....:  
NP_000      MATHHTLWMGLALLGVLGDLQAAPEAQVS-VQP--NFQQDKFLGRWFSAGLASNS
                    10        20         30          40        50  

               70          80        90       100       110        
pF1KE1 RFLQEQGHRAEATTLHVAP--QGTAMAVSTFRKLDGICWQVRQLYGDTGVLGRFLLQARG
        .:.:.          :::  .:    .::: . .  :    .:   .: :: .  ..  
NP_000 SWLREKKAALSMCKSVVAPATDGGLNLTSTFLRKNQ-CETRTMLLQPAGSLGSYSYRSPH
             60        70        80         90       100       110 

      120       130       140            150       160       170   
pF1KE1 ARGAVHVVVAETDYQSFAVLYLERA---GQ--LSVKLYARSLPVSDSVLSGFEQRVQEAH
         ..  : :.::::...:.:: . .   :.    . ::.:.      .   :    .   
NP_000 WGSTYSVSVVETDYDQYALLYSQGSKGPGEDFRMATLYSRTQTPRAELKEKFTAFCKAQG
             120       130       140       150       160       170 

           180       190       200  
pF1KE1 LTEDQIFYFPKYGFCEAADQFHVLDEVRR
       .::: : ..:.   :              
NP_000 FTEDTIVFLPQTDKCMTEQ          
             180       190          

>>NP_005555 (OMIM: 600181) neutrophil gelatinase-associa  (198 aa)
 initn:  86 init1:  86 opt: 145  Z-score: 188.3  bits: 41.7 E(85289): 0.00095
Smith-Waterman score: 145; 23.4% identity (54.7% similar) in 192 aa overlap (2-183:1-189)

                10        20        30        40        50         
pF1KE1 MLPPGTATL-LTLLLAAGSLGQKPQRPRRPASPISTIQPKANFDAQQFAGTWLLVAVGSA
        .: :   : :.:: :  . .:       :: :.: .  . ::. .:: : : .:.... 
NP_005  MPLGLLWLGLALLGALHAQAQDSTSDLIPAPPLSKVPLQQNFQDNQFQGKWYVVGLAGN
                10        20        30        40        50         

      60        70        80          90       100       110       
pF1KE1 CRFLQEQGHRAEATTLHVAPQGTAMAVST--FRKLDGICWQVRQLYGDTGVLGRFLL-QA
         . ...  .   .:..   .  .. :..  :::     : .: .       :.: : . 
NP_005 AILREDKDPQKMYATIYELKEDKSYNVTSVLFRKKKCDYW-IRTFVPGCQP-GEFTLGNI
      60        70        80        90        100        110       

        120         130       140           150       160       170
pF1KE1 RGARGAVH--VVVAETDYQSFAVLYLERAGQ----LSVKLYARSLPVSDSVLSGFEQRVQ
       ..  : .   : :. :.:.. :........:    ... ::.:.  ... .  .: .  .
NP_005 KSYPGLTSYLVRVVSTNYNQHAMVFFKKVSQNREYFKITLYGRTKELTSELKENFIRFSK
       120       130       140       150       160       170       

              180       190       200  
pF1KE1 EAHLTEDQIFYFPKYGFCEAADQFHVLDEVRR
          : :..:  ::                   
NP_005 SLGLPENHIV-FPVPIDQCIDG          
       180        190                  




202 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:37:14 2016 done: Sun Nov  6 15:37:15 2016
 Total Scan time:  6.270 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]