FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1695, 202 aa
  1>>>pF1KE1695 202 - 202 aa - 202 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1776+/-0.000687; mu= 14.2895+/- 0.041
 mean_var=62.4144+/-12.724, 0's: 0 Z-trim(110.1): 12  B-trim: 469 in 1/51
 Lambda= 0.162342
 statistics sampled from 11331 (11342) to 11331 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.348), width:  16
 Scan time:  2.210

The best scores are:                                      opt bits E(32554)
CCDS7017.1 C8G gene_id:733|Hs108|chr9              ( 202) 1327 318.7 1.5e-87
CCDS7006.1 LCN15 gene_id:389812|Hs108|chr9         ( 184)  248 65.9 1.7e-11


>>CCDS7017.1 C8G gene_id:733|Hs108|chr9                   (202 aa)
 initn: 1327 init1: 1327 opt: 1327  Z-score: 1685.0  bits: 318.7 E(32554): 1.5e-87
Smith-Waterman score: 1327; 99.5% identity (99.5% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KE1 MLPPGTATLLTLLLAAGSLGQKPQRPRRPASPISTIQPKANFDAQQFAGTWLLVAVGSAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 MLPPGTATLLTLLLAAGSLGQKPQRPRRPASPISTIQPKANFDAQQFAGTWLLVAVGSAC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RFLQEQGHRAEATTLHVAPQGTAMAVSTFRKLDGICWQVRQLYGDTGVLGRFLLQARGAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
CCDS70 RFLQEQGHRAEATTLHVAPQGTAMAVSTFRKLDGICWQVRQLYGDTGVLGRFLLQARDAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GAVHVVVAETDYQSFAVLYLERAGQLSVKLYARSLPVSDSVLSGFEQRVQEAHLTEDQIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 GAVHVVVAETDYQSFAVLYLERAGQLSVKLYARSLPVSDSVLSGFEQRVQEAHLTEDQIF
              130       140       150       160       170       180

              190       200  
pF1KE1 YFPKYGFCEAADQFHVLDEVRR
       ::::::::::::::::::::::
CCDS70 YFPKYGFCEAADQFHVLDEVRR
              190       200  

>>CCDS7006.1 LCN15 gene_id:389812|Hs108|chr9              (184 aa)
 initn: 172 init1:  83 opt: 248  Z-score: 319.9  bits: 65.9 E(32554): 1.7e-11
Smith-Waterman score: 248; 34.0% identity (61.6% similar) in 159 aa overlap (36-188:24-176)

          10        20        30        40        50        60     
pF1KE1 TATLLTLLLAAGSLGQKPQRPRRPASPISTIQPKANFDAQQFAGTWLLVAVGSACR-FLQ
                                     .::  .:.:..:.: : .:...: :: :: 
CCDS70        MMSFLLGAILTLLWAPTAQAEVLLQP--DFNAEKFSGLWYVVSMASDCRVFLG
                      10        20          30        40        50 

           70         80        90       100       110       120   
pF1KE1 EQGHRAEAT-TLHVAPQGTAMAVSTFRKLDGICWQVRQLYGDTGVLGRFLLQARGARGAV
       .. : . .: ... . .:   .   :   :: : ::   :  .:  :.: . :    : .
CCDS70 KKDHLSMSTRAIRPTEEGGLHVHMEFPGADG-CNQVDAEYLKVGSEGHFRVPAL---GYL
              60        70        80         90       100          

           130       140           150       160       170         
pF1KE1 HVVVAETDYQSFAVLYL--ERAGQLS--VKLYARSLPVSDSVLSGFEQRVQEAHLTEDQI
        : ...:::.::::::.  :  : ::  :.::.:.  :: ..:..:..      : .:..
CCDS70 DVRIVDTDYSSFAVLYIYKELEGALSTMVQLYSRTQDVSPQALKSFQDFYPTLGLPKDMM
       110       120       130       140       150       160       

     180       190       200  
pF1KE1 FYFPKYGFCEAADQFHVLDEVRR
        ..:.   :              
CCDS70 VMLPQSDACNPESKEAP      
       170       180          




202 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:37:13 2016 done: Sun Nov  6 15:37:14 2016
 Total Scan time:  2.210 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]