FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1692, 200 aa
  1>>>pF1KE1692 200 - 200 aa - 200 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9679+/-0.000619; mu= 16.1887+/- 0.038
 mean_var=73.1168+/-14.074, 0's: 0 Z-trim(112.6): 4  B-trim: 0 in 0/52
 Lambda= 0.149991
 statistics sampled from 13338 (13341) to 13338 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.41), width:  16
 Scan time:  2.180

The best scores are:                                      opt bits E(32554)
CCDS12531.1 IFNL1 gene_id:282618|Hs108|chr19       ( 200) 1337 297.5 3.6e-81
CCDS12530.1 IFNL3 gene_id:282617|Hs108|chr19       ( 196)  899 202.7 1.2e-52
CCDS42567.1 IFNL2 gene_id:282616|Hs108|chr19       ( 200)  884 199.5 1.1e-51


>>CCDS12531.1 IFNL1 gene_id:282618|Hs108|chr19            (200 aa)
 initn: 1337 init1: 1337 opt: 1337  Z-score: 1570.8  bits: 297.5 E(32554): 3.6e-81
Smith-Waterman score: 1337; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)

               10        20        30        40        50        60
pF1KE1 MAAAWTVVLVTLVLGLAVAGPVPTSKPTTTGKGCHIGRFKSLSPQELASFKKARDALEES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAAAWTVVLVTLVLGLAVAGPVPTSKPTTTGKGCHIGRFKSLSPQELASFKKARDALEES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LKLKNWSCSSPVFPGNWDLRLLQVRERPVALEAELALTLKVLEAAAGPALEDVLDQPLHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LKLKNWSCSSPVFPGNWDLRLLQVRERPVALEAELALTLKVLEAAAGPALEDVLDQPLHT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LHHILSQLQACIQPQPTAGPRPRGRLHHWLHRLQEAPKKESAGCLEASVTFNLFRLLTRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LHHILSQLQACIQPQPTAGPRPRGRLHHWLHRLQEAPKKESAGCLEASVTFNLFRLLTRD
              130       140       150       160       170       180

              190       200
pF1KE1 LKYVADGNLCLRTSTHPEST
       ::::::::::::::::::::
CCDS12 LKYVADGNLCLRTSTHPEST
              190       200

>>CCDS12530.1 IFNL3 gene_id:282617|Hs108|chr19            (196 aa)
 initn: 948 init1: 521 opt: 899  Z-score: 1058.7  bits: 202.7 E(32554): 1.2e-52
Smith-Waterman score: 899; 74.1% identity (86.8% similar) in 189 aa overlap (8-191:8-196)

               10        20           30        40        50       
pF1KE1 MAAAWTVVLVTLVLGLAVAGPVPTSK---PTTTGKGCHIGRFKSLSPQELASFKKARDAL
              ::: ..  :.:.: ::...       ..::::..::::::::: .::.:.:::
CCDS12 MTGDCMPVLVLMAAVLTVTGAVPVARLRGALPDARGCHIAQFKSLSPQELQAFKRAKDAL
               10        20        30        40        50        60

        60        70        80        90       100         110     
pF1KE1 EESLKLKNWSCSSPVFPGNWDLRLLQVRERPVALEAELALTLKVLEAAAG--PALEDVLD
       :::: ::. .: : .:: .:::: :::::::::::::::::::::::.:   ::: ::::
CCDS12 EESLLLKDCKCRSRLFPRTWDLRQLQVRERPVALEAELALTLKVLEATADTDPALGDVLD
               70        80        90       100       110       120

         120       130       140       150       160       170     
pF1KE1 QPLHTLHHILSQLQACIQPQPTAGPRPRGRLHHWLHRLQEAPKKESAGCLEASVTFNLFR
       :::::::::::::.:::::::::::: ::::::::::::::::::: :::::::::::::
CCDS12 QPLHTLHHILSQLRACIQPQPTAGPRTRGRLHHWLHRLQEAPKKESPGCLEASVTFNLFR
              130       140       150       160       170       180

         180       190       200
pF1KE1 LLTRDLKYVADGNLCLRTSTHPEST
       ::::::. ::.:.::.         
CCDS12 LLTRDLNCVASGDLCV         
              190               

>>CCDS42567.1 IFNL2 gene_id:282616|Hs108|chr19            (200 aa)
 initn: 930 init1: 509 opt: 884  Z-score: 1041.1  bits: 199.5 E(32554): 1.1e-51
Smith-Waterman score: 884; 72.3% identity (85.9% similar) in 191 aa overlap (6-191:10-200)

                   10        20           30        40        50   
pF1KE1     MAAAWTVVLVTLVLGLAVAGPVPTSK---PTTTGKGCHIGRFKSLSPQELASFKKA
                : ::: ..  :.:.: ::...       ..::::..::::::::: .::.:
CCDS42 MKLDMTGDCTPVLVLMAAVLTVTGAVPVARLHGALPDARGCHIAQFKSLSPQELQAFKRA
               10        20        30        40        50        60

            60        70        80        90       100         110 
pF1KE1 RDALEESLKLKNWSCSSPVFPGNWDLRLLQVRERPVALEAELALTLKVLEAAAG--PALE
       .::::::: ::.  : : .:: .:::: :::::::.:::::::::::::::.:   ::: 
CCDS42 KDALEESLLLKDCRCHSRLFPRTWDLRQLQVRERPMALEAELALTLKVLEATADTDPALV
               70        80        90       100       110       120

             120       130       140       150       160       170 
pF1KE1 DVLDQPLHTLHHILSQLQACIQPQPTAGPRPRGRLHHWLHRLQEAPKKESAGCLEASVTF
       ::::::::::::::::..:::::::::::: ::::::::.:::::::::: :::::::::
CCDS42 DVLDQPLHTLHHILSQFRACIQPQPTAGPRTRGRLHHWLYRLQEAPKKESPGCLEASVTF
              130       140       150       160       170       180

             180       190       200
pF1KE1 NLFRLLTRDLKYVADGNLCLRTSTHPEST
       ::::::::::. ::.:.::.         
CCDS42 NLFRLLTRDLNCVASGDLCV         
              190       200         




200 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:02:05 2016 done: Sun Nov  6 05:02:05 2016
 Total Scan time:  2.180 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]